X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2Falwview.html;h=f59e0146b15420cccd3c1d5e6a00913c634a2d9a;hb=a8f483d04205bb8273ee311c12968b7e86d205fa;hp=75e3904384f58009f56d4103e4943f61a97c3159;hpb=0696cffbccbb537be78d9fc2410589adbcd7be35;p=jalview.git
diff --git a/help/html/menus/alwview.html b/help/html/menus/alwview.html
index 75e3904..f59e014 100755
--- a/help/html/menus/alwview.html
+++ b/help/html/menus/alwview.html
@@ -1,20 +1,21 @@
Alignment Window Menus
@@ -49,10 +50,15 @@
Enable or disable the display of the histogram above the consensus sequence.
- Show Consensus Profile
+ Show Consensus Logo
Enable or disable the display of the sequence logo above the consensus sequence.
-
+ Normalise Consensus Logo
+ When enabled, scales all logo stacks to the same height,
+ making it easier to compare symbol diversity in highly variable
+ regions.
+
+
Group Conservation
When ticked, display a conservation row for all groups (only available for protein alignments).