X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2FdesktopMenu.html;h=1fa861a18c6c6fe507ccda09ce89f9df84f3988b;hb=a9abe07c6490582e506047fa6ad5edafbc25213f;hp=29857b9dc5261ae58c77703208753b56d05727f8;hpb=c973cc268cbba93fa4ca9620c3910d30891a5abc;p=jalview.git
diff --git a/help/html/menus/desktopMenu.html b/help/html/menus/desktopMenu.html
index 29857b9..1fa861a 100755
--- a/help/html/menus/desktopMenu.html
+++ b/help/html/menus/desktopMenu.html
@@ -1,8 +1,8 @@
-Desktop Menu
+Desktop Menus
-Desktop Menu
+Desktop Menus
- File
- Save Project
- Saves all currently open alignment windows with their current visible
- settings as a Jalview File, with the .jar extension. Each alignment will
- also save the currently active tree associated with the window, if one
- exists.
+ Saves all currently open alignment windows with their current view
+ settings and any associated trees, as a Jalview Archive (which has a .jar extension).
- Load Project
- Loads Jalview file formatted alignments only.
+ Loads Jalview archives only.
- Quit
Close Jalview. Warning - any annotations you have made on alignments
will be lost unless you Save your work before quitting.
@@ -40,12 +38,21 @@
- Help
- - About,
+ - About
+ Displays the version and creation date of the application,
+ as well as acknowledgements and a citation reference.
- Documentation
+ Displays help files as a browseable, searchable set of pages
+ with a table of contents.
- - Window
+ - Window
+ Each time a new window is added to the Jalview Desktop a new
+ menu item will be added to the "Window" menu. If you are working
+ with several alignments, trees or other types of windows use the "Window"
+ menu to bring your window of choice to the top of the pile if it has been
+ hidden by other windows.