X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2FdesktopMenu.html;h=c99b64c1084d485010bbd63595d23f6148ca70c0;hb=16019224bf7ab31b3b19e6e27aa55b4d75de6f8b;hp=29857b9dc5261ae58c77703208753b56d05727f8;hpb=c973cc268cbba93fa4ca9620c3910d30891a5abc;p=jalview.git
diff --git a/help/html/menus/desktopMenu.html b/help/html/menus/desktopMenu.html
index 29857b9..c99b64c 100755
--- a/help/html/menus/desktopMenu.html
+++ b/help/html/menus/desktopMenu.html
@@ -1,8 +1,8 @@
-Desktop Menu
+Desktop Menus
-Desktop Menu
+Desktop Menus
- File
@@ -17,13 +17,16 @@
copy and paste an alignment into a text window
+ Fetch Sequence
+ Shows a dialog window in which you can select known ids from
+ Uniprot, EMBL, EMBLCDS or PDB database using Web Services provided by
+ the European Bioinformatics Institute.
Save Project
- Saves all currently open alignment windows with their current visible
- settings as a Jalview File, with the .jar extension. Each alignment will
- also save the currently active tree associated with the window, if one
- exists.
+ Saves all currently open alignment windows with their current view
+ settings and any associated trees, as a Jalview
+ Archive (which has a .jar extension).
Load Project
- Loads Jalview file formatted alignments only.
+ Loads Jalview archives only.
Quit
Close Jalview. Warning - any annotations you have made on alignments
will be lost unless you Save your work before quitting.
@@ -40,12 +43,21 @@
Help
- - About,
+ - About
+ Displays the version and creation date of the application,
+ as well as acknowledgements and a citation reference.
- Documentation
+ Displays help files as a browseable, searchable set of pages
+ with a table of contents.
- Window
+ Window
+ Each time a new window is added to the Jalview Desktop a new
+ menu item will be added to the "Window" menu. If you are working
+ with several alignments, trees or other types of windows use the "Window"
+ menu to bring your window of choice to the top of the pile if it has been
+ hidden by other windows.