X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2FpopupMenu.html;h=0b9839073cebb042298b43ee64b1a609d85bc368;hb=fd102a4945da5c62de156159c98a6a2c51f1ebbc;hp=1eb23668e0325d9ce4fe764c9f76952d5ea4018e;hpb=c17661b22323a66090ea91e04751aa17461b17c5;p=jalview.git

diff --git a/help/html/menus/popupMenu.html b/help/html/menus/popupMenu.html
index 1eb2366..0b98390 100755
--- a/help/html/menus/popupMenu.html
+++ b/help/html/menus/popupMenu.html
@@ -144,9 +144,8 @@
             and sequence description to be entered. Press OK to accept
             your edit. To save sequence descriptions, you must save in
             Fasta, PIR or Jalview File format.</em></li>
-        <li><a href="sqaddrefannot"><strong>Add
-              Reference Annotations<br>
-          </strong><em>When enabled, copies any available alignment
+        <li><strong>Add <a href="../features/annotation.html#seqannots">Reference Annotations</a></strong><br>
+              <em>When enabled, copies any available alignment
               annotation for this sequence to the current view.</em></li>
         <li><strong>Set as Reference</strong> or <strong>Unmark
             as Reference</strong><br /> Sets or unsets the reference sequence for
@@ -172,13 +171,11 @@
       </ul></li>
     <li><strong>3D Structure Data...</strong> </strong><em>This menu is
         visible when you right-click on a sequence name. When this
-        option is clicked, Jalview will open a <a
-        href="../features/structurechooser.html"
-      >'Structure Chooser' </a> dialogue with options to select the
-        structure which will eventually be opened in a 3D interactive
-        view.<br> These entries will only be present if the
-        sequence has <a href="../features/viewingpdbs.html">associated
-          PDB structures</a>.
+        option is clicked, Jalview will open the <a
+        href="../features/structurechooser.html">'Structure
+          Chooser' </a>, which allows you to discover and view 3D structures
+        for the current selection. For more info, see <a
+        href="../features/viewingpdbs.html">viewing PDB structures</a>.
     </em></li>
     <li><strong>VARNA 2D Structure</strong><br />
     <em> If the sequence or alignment has RNA structure, then <strong>VARNA