X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2FpopupMenu.html;h=61063ed7a7dae511d947b916a9a654a23677c207;hb=153dd62dc91da13ae732600e6ea55ddbe15eab39;hp=a836c9fc15e7bde3043ab1019a8fa5ac6ee05aef;hpb=244a1460b0d7ae9a7a8c57d3a767b327788e8bd3;p=jalview.git
diff --git a/help/html/menus/popupMenu.html b/help/html/menus/popupMenu.html
index a836c9f..61063ed 100755
--- a/help/html/menus/popupMenu.html
+++ b/help/html/menus/popupMenu.html
@@ -1,4 +1,21 @@
+
Popup Menu
@@ -66,9 +83,22 @@ not be accessible when in 'Cursor Mode' (toggled with the F2 key).
Selecting this will display a "Colour Chooser"
window. Select a colour than press OK to set the border colour of
a group.
-
+ Show Unconserved
+ When this is selected, all symbols in the group matching the consensus sequence at that column will be rendered as a '.', highlighting mutations in the group area.
+
+
+
Sequence Id
This menu is only visible if you right-click on a sequence name.
@@ -84,11 +114,14 @@ not be accessible when in 'Cursor Mode' (toggled with the F2 key).
All sequences in the current selection group will be hidden, apart
from (Sequence Id). Any edits performed on the visible representative
sequence will be propagated to the hidden sequences.
- Link
+ Link
This menu item lists all links which have been set up in the Preferences
Connections tab.
Since Jalview 2.4, links will also be made for database cross
references (where the database name exactly matches the link name set up in Preferences).
+
Since Jalview 2.5, links are also shown for non-positional sequence features attached to
+ the sequence, and any regular-expression based URL links that
+ matched the description line.