X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2FpopupMenu.html;h=7c3db2c0f080427385319e32299fab1d319f2075;hb=524f1bc53749f18e8217ec14b72d3a2a444c072f;hp=9393570647e08b6e395acb68dbf081ea1dfcb09a;hpb=4617e2a7b9db1b82d3fd2023ab338435b032550e;p=jalview.git
diff --git a/help/html/menus/popupMenu.html b/help/html/menus/popupMenu.html
index 9393570..7c3db2c 100755
--- a/help/html/menus/popupMenu.html
+++ b/help/html/menus/popupMenu.html
@@ -1,4 +1,21 @@
+
Popup Menu
@@ -11,6 +28,10 @@ not be accessible when in 'Cursor Mode' (toggled with the F2 key).
- Selection
+ - Sequence Details ...
+ (Since Jalview 2.8)
Open an HTML report containing the annotation
+ and database cross references normally shown in the sequence's
+ tooltip.
- Edit
- Copy
@@ -66,15 +87,32 @@ not be accessible when in 'Cursor Mode' (toggled with the F2 key).
Selecting this will display a "Colour Chooser"
window. Select a colour than press OK to set the border colour of
a group.
-
+ - Show Unconserved
+ When this is selected, all symbols in the group matching the consensus sequence at that column will be rendered as a '.', highlighting mutations in the group area.
+
+
+
Sequence Id
This menu is only visible if you right-click on a sequence name.
@@ -114,10 +158,11 @@ not be accessible when in 'Cursor Mode' (toggled with the F2 key).
View Structure
If the sequence has an associated PDB file added by one
- of the methods described above, Jalview will display a 3D interactive
- viewer of the file.
+ of the methods described above, Jalview will open a 3D interactive
+ view of the file.
These entries will only be present if the sequence has associated PDB structures.
+ href="../features/viewingpdbs.html">associated PDB structures.
+ If the sequence or alignment has RNA structure, then 2D RNA entries will also be present enabling you to open a linked view of the RNA structure in VARNA.