X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2FpopupMenu.html;h=7c3db2c0f080427385319e32299fab1d319f2075;hb=c4b3f11eeec8b3d01027d251054b8390ed4deae2;hp=30d90335eaca8e64c1b94c24c584be172462fbab;hpb=7b3105fb21bff8b9ce42b5eff5145ec45cf8d15f;p=jalview.git

diff --git a/help/html/menus/popupMenu.html b/help/html/menus/popupMenu.html
index 30d9033..7c3db2c 100755
--- a/help/html/menus/popupMenu.html
+++ b/help/html/menus/popupMenu.html
@@ -1,14 +1,14 @@
 <html>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
@@ -28,6 +28,10 @@ not be accessible when in 'Cursor Mode' (toggled with the F2 key).</em></p>
 <ul>
   <li><strong>Selection</strong> 
     <ul>
+      <li><a name="sqreport"><strong>Sequence Details ...<br>
+          </strong></a><em>(Since Jalview 2.8)<br>Open an <a href="../io/exportseqreport.html">HTML report containing the annotation
+            and database cross references</a> normally shown in the sequence's
+            tooltip.</em></li>
       <li><strong>Edit </strong> 
         <ul>
           <li><strong>Copy</strong><br>
@@ -104,7 +108,11 @@ not be accessible when in 'Cursor Mode' (toggled with the F2 key).</em></p>
     </strong><em>This menu is only visible if you right-click on a sequence name. 
     </em> 
     <ul>
-      <li><strong>Edit Name/Description<br>
+      <li><a name="sqreport"><strong>Sequence Details ...<br>
+					</strong></a><em>(Since Jalview 2.8)<br>Open an <a href="../io/exportseqreport.html">HTML report containing the annotation
+						and database cross references</a> normally shown in the sequence's
+						tooltip.</em></li>
+			<li><strong>Edit Name/Description<br>
         </strong><em>You may edit the name and description of each sequence. A 
         window will be displayed asking for a new sequence name and sequence description 
         to be entered. Press OK to accept your edit. To save sequence descriptions, 
@@ -150,10 +158,11 @@ not be accessible when in 'Cursor Mode' (toggled with the F2 key).</em></p>
       </li>
       <li><strong>View Structure<br>
         </strong><em> If the sequence has an associated PDB file added by one 
-        of the methods described above, Jalview will display a 3D interactive 
-        viewer of the file.<br>
+        of the methods described above, Jalview will open a 3D interactive 
+        view of the file.<br>
         These entries will only be present if the sequence has <a
-			href="../features/viewingpdbs.html">associated PDB structures</a>.</em><br>
+			href="../features/viewingpdbs.html">associated PDB structures</a>.<br/>
+			If the sequence or alignment has RNA structure, then <strong>2D RNA</strong> entries will also be present enabling you to open a linked view of the RNA structure in <a href="../features/varna.html">VARNA</a>.</em><br>
       </li>
     </ul>
   </li>
