X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2FpopupMenu.html;h=8eab2d0defc6c04162259c1063fc08e0223e09c9;hb=6235128370382f0fecdf3ba1cc683052c5aa11e7;hp=6e8eeb2b6ba835a4ea20b1c0232aaaffe8ea9b04;hpb=e641357d074cf8f3b9ee877f47879d6e22ac1ce1;p=jalview.git
diff --git a/help/html/menus/popupMenu.html b/help/html/menus/popupMenu.html
index 6e8eeb2..8eab2d0 100755
--- a/help/html/menus/popupMenu.html
+++ b/help/html/menus/popupMenu.html
@@ -1,4 +1,21 @@
+
Popup Menu
@@ -11,6 +28,10 @@ not be accessible when in 'Cursor Mode' (toggled with the F2 key).
- Selection
+ - Sequence Details ...
+ (Since Jalview 2.8)
Open an HTML report containing the annotation
+ and database cross references normally shown in the sequence's
+ tooltip.
- Edit
- Copy
@@ -38,18 +59,22 @@ not be accessible when in 'Cursor Mode' (toggled with the F2 key).
- Create Sequence Feature...
Opens the dialog box for creating sequence features over the currently
selected region on each selected sequence.
- - Group
- Group Operations
-
- - GroupThis is the first entry in the
- menu, and will display the currently selected group's
- name. Selecting it displays a window allowing the name and
- description for this group to be edited. Click OK to set the
- new name and decription, and cancel to leave the existing
- name and description unchanged.
+ - Create Group
+ This will define a new group from the current selection.
+
- Remove Group
This will undefine the selected group.
+ - Edit (New) Group
+ Group Editing Menu
Options in this menu modify
+ the name and display properties of the currently selected group, or
+ a new group defined using the current selection.
+
+ - Name: <Group> or Edit name and description
The first entry in the
+ menu displays the name for the currently selected group, if it has one. Selecting this option opens a window allowing the name and
+ description for this group to be edited. Click OK to set the
+ new name and decription, and cancel to leave the existing
+ name and description unchanged.
- Group Colour
Sets the colour
of the group.
@@ -71,7 +96,8 @@ not be accessible when in 'Cursor Mode' (toggled with the F2 key).
- - Group Links
+
- Sequence Id
This menu is only visible if you right-click on a sequence name.
- - Edit Name/Description
+ - Sequence Details ...
+ (Since Jalview 2.8)
Open an HTML report containing the annotation
+ and database cross references normally shown in the sequence's
+ tooltip.
+ - Edit Name/Description
You may edit the name and description of each sequence. A
window will be displayed asking for a new sequence name and sequence description
to be entered. Press OK to accept your edit. To save sequence descriptions,
@@ -132,10 +162,11 @@ not be accessible when in 'Cursor Mode' (toggled with the F2 key).
- View Structure
If the sequence has an associated PDB file added by one
- of the methods described above, Jalview will display a 3D interactive
- viewer of the file.
+ of the methods described above, Jalview will open a 3D interactive
+ view of the file.
These entries will only be present if the sequence has associated PDB structures.
+ href="../features/viewingpdbs.html">associated PDB structures.
+ If the sequence or alignment has RNA structure, then 2D RNA entries will also be present enabling you to open a linked view of the RNA structure in VARNA.