X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2FpopupMenu.html;h=d4b8b5fa5f214a64012b4bdf4832a71e81f63538;hb=2a436b9052affcfeb6f3748a40de53f6b8a7e9ef;hp=14dc17879564593a2f2feea48a81d596b5d227b0;hpb=8891eedbf7430d8a98edc1cccb32fceac8e3a9bb;p=jalview.git

diff --git a/help/html/menus/popupMenu.html b/help/html/menus/popupMenu.html
index 14dc178..d4b8b5f 100755
--- a/help/html/menus/popupMenu.html
+++ b/help/html/menus/popupMenu.html
@@ -42,21 +42,30 @@
     </strong><em>This menu is only visible if you right-click on a sequence name. 
     </em> 
     <ul>
-      <li><strong>Edit Name<br>
-        </strong><em>You may edit the name of each sequence. A window will be 
-        displayed asking for a new sequence name to be entered. Press OK to accept 
-        your edit.</em><strong><br>
+      <li><strong>Edit Name/Description<br>
+        </strong><em>You may edit the name and description of each sequence. A 
+        window will be displayed asking for a new sequence name and sequence description 
+        to be entered. Press OK to accept your edit. To save sequence descriptions, 
+        you must save in Fasta, PIR or Jalview File format.</em><strong><br>
         </strong></li>
       <li><strong>View PDB Structure<br>
-        </strong><em>In the current version you will first need to select &quot;View 
-        -&gt; Sequence Features&quot; before associating a PDB file with a sequence. 
-        <br>
+        </strong><em>
         If the sequence has a PDB file associated with it Jalview will display 
-        a 3D interactive viewer of the file. </em><strong><br>
-        <br>
-        </strong></li>
+        a 3D interactive viewer of the file.<br>
+This entry is only present if the sequence has an
+  <a href="../features/viewingpdbs.html">associated PDB structure</a>.
+  If you can't see this entry for your sequence, and the sequence name
+  is a uniprot identifier, then try enabling the &quot;View 
+        -&gt; Sequence Features&quot; and opening the popup menu again.</em>
+        </li>
     </ul>
   </li>
+  <li><strong><em>Link</em></strong><br>
+    <em>This menu item lists all links which have been set up in the <a href="../features/preferences.html">Preferences</a> 
+    Connections tab. It is only displayed when you right click (Apple click) on 
+    a sequence id. </em><strong><br>
+    <br>
+    </strong></li>
 </ul>
 </body>
 </html>