X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2FpopupMenu.html;h=f87567289ac16a5637a9cd92e84eee14651c42a3;hb=1335a93a7eb656ab1bd08572d4be2b386a9043c9;hp=9cf53587bffe76b81ee79c7468345b43d9197d68;hpb=fd6fc6bbcf3cf91b6f218729cc014997782053b1;p=jalview.git diff --git a/help/html/menus/popupMenu.html b/help/html/menus/popupMenu.html index 9cf5358..f875672 100755 --- a/help/html/menus/popupMenu.html +++ b/help/html/menus/popupMenu.html @@ -1,4 +1,21 @@ + Popup Menu @@ -66,9 +83,22 @@ not be accessible when in 'Cursor Mode' (toggled with the F2 key).

Selecting this will display a "Colour Chooser" window. Select a colour than press OK to set the border colour of a group. - +
  • Show Unconserved
    +     When this is selected, all symbols in the group matching the consensus sequence at that column will be rendered as a '.', highlighting mutations in the group area. +
    • + +
  • Sequence Id
    This menu is only visible if you right-click on a sequence name. @@ -89,7 +119,7 @@ not be accessible when in 'Cursor Mode' (toggled with the F2 key).

    Connections tab.
    Since Jalview 2.4, links will also be made for database cross references (where the database name exactly matches the link name set up in Preferences). -
    Since Jalview 2.4.1, links are also shown for non-positional sequence features attached to +
    Since Jalview 2.5, links are also shown for non-positional sequence features attached to the sequence, and any regular-expression based URL links that matched the description line.
    @@ -120,8 +150,8 @@ not be accessible when in 'Cursor Mode' (toggled with the F2 key).

  • View Structure
     If the sequence has an associated PDB file added by one - of the methods described above, Jalview will display a 3D interactive - viewer of the file.
    + of the methods described above, Jalview will open a 3D interactive + view of the file.
    These entries will only be present if the sequence has associated PDB structures.