X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2FpopupMenu.html;h=f87567289ac16a5637a9cd92e84eee14651c42a3;hb=a45774ee31d9f35d4eff46d54d7deab719afb092;hp=9393570647e08b6e395acb68dbf081ea1dfcb09a;hpb=4617e2a7b9db1b82d3fd2023ab338435b032550e;p=jalview.git diff --git a/help/html/menus/popupMenu.html b/help/html/menus/popupMenu.html index 9393570..f875672 100755 --- a/help/html/menus/popupMenu.html +++ b/help/html/menus/popupMenu.html @@ -1,4 +1,21 @@ + Popup Menu @@ -66,9 +83,22 @@ not be accessible when in 'Cursor Mode' (toggled with the F2 key).

Selecting this will display a "Colour Chooser" window. Select a colour than press OK to set the border colour of a group. - +
  • Show Unconserved
    +     When this is selected, all symbols in the group matching the consensus sequence at that column will be rendered as a '.', highlighting mutations in the group area. +
    • + +
  • Sequence Id
    This menu is only visible if you right-click on a sequence name. @@ -84,9 +114,15 @@ not be accessible when in 'Cursor Mode' (toggled with the F2 key).

    All sequences in the current selection group will be hidden, apart from (Sequence Id). Any edits performed on the visible representative sequence will be propagated to the hidden sequences.
    • -
  • Link
    +
  • Link
    This menu item lists all links which have been set up in the     Preferences - Connections tab.
    + Connections tab.
    + Since Jalview 2.4, links will also be made for database cross + references (where the database name exactly matches the link name set up in Preferences). +
    Since Jalview 2.5, links are also shown for non-positional sequence features attached to + the sequence, and any regular-expression based URL links that + matched the description line. +
    • @@ -114,8 +150,8 @@ not be accessible when in 'Cursor Mode' (toggled with the F2 key).

  • View Structure
     If the sequence has an associated PDB file added by one - of the methods described above, Jalview will display a 3D interactive - viewer of the file.
    + of the methods described above, Jalview will open a 3D interactive + view of the file.
    These entries will only be present if the sequence has associated PDB structures.