X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2Fwsmenu.html;h=7584ca1fff019a2e74dfde33772392537e61257e;hb=a14da63fa1dabed03c67eadc39c6b4a61c5102f0;hp=66f864c53059297e42731c9cd69e977a7a1b089e;hpb=c29c0a190d8095d8a0c646a59447cadaa2a5af55;p=jalview.git

diff --git a/help/html/menus/wsmenu.html b/help/html/menus/wsmenu.html
index 66f864c..7584ca1 100755
--- a/help/html/menus/wsmenu.html
+++ b/help/html/menus/wsmenu.html
@@ -8,6 +8,11 @@
   on compute facilities at the University of Dundee. You need a continuous network 
   connection in order to use these services through Jalview. </em> </p>
 <ul>
+  <li><strong>Fetch DB References</strong><br>
+    This will use the service WSDBFetch, provided by the EBI, to retrieve all 
+    database references and PDB ids associated with the selected sequences in 
+    the alignment if the sequences have valid Uniprot names or accession ids. 
+  </li>
   <li><strong>Alignment</strong> 
     <ul>
       <li><strong>ClustalW Multiple Sequence Alignment</strong><br>
@@ -17,8 +22,11 @@
         <em> Submits the alignment or currently selected region for re-alignment 
         with clustal W. Use this if you have added some new sequences to an existing 
         alignment.</em></li>
+      <li><strong>MAFFT Multiple Sequence Alignment</strong><br>
+        <em>Submits all, or just the currently selected region for alignment with 
+        MAFFT. </em> </li>
       <li><strong>Muscle Multiple Protein Sequence Alignment</strong><br>
-        <em> Submits all, or jut the currently selected sequences for alignment 
+        <em> Submits all, or just the currently selected sequences for alignment 
         using Muscle. Do not use this if you are working with nucleic acid sequences.</em></li>
     </ul>
   </li>
@@ -36,8 +44,8 @@
         detection and prediction. </em></li>
       <li><em>If a set of sequences are selected, and they appear to be aligned, 
         then the alignment will be used for a Jnet prediction on the <strong>first</strong> 
-        sequence in the set (that is, the one that appears first in
-        the alignment window). </em> </li>
+        sequence in the set (that is, the one that appears first in the alignment 
+        window). </em> </li>
     </ul>
   </li>
 </ul>