X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2Fwsmenu.html;h=86acf934f559a49fa96de3bc1deb6cb6c630bba2;hb=c53aeee9a688f68d64106a968876e542f701fbc6;hp=a1df34ae97f793f6b010bb359354906384d6eac7;hpb=89fcbb9f03f1a8b29509beb2588fd320f804d1fd;p=jalview.git
diff --git a/help/html/menus/wsmenu.html b/help/html/menus/wsmenu.html
index a1df34a..86acf93 100755
--- a/help/html/menus/wsmenu.html
+++ b/help/html/menus/wsmenu.html
@@ -1,18 +1,46 @@
+
Web Service Menu
Web Service Menu
-
- Selecting one of the following menu items starts a remote service
- on compute facilities at the University of Dundee. You need a continuous network
- connection in order to use these services through Jalview.
- Fetch DB References
- This will use the service WSDBFetch, provided by the EBI, to retrieve all
- uniprot database cross references and PDB ids associated with the selected sequences in
- the alignment if the sequences have valid Uniprot names or accession ids.
+ This will use any of the database services that Jalview is aware
+ of (e.g. DAS sequence servers and the WSDBFetch service provided by the EBI)
+ to verify the sequence and retrieve all database cross references and PDB ids
+ associated with all or just the selected sequences in the alignment.
+
'Standard Databases' will check sequences against the EBI databases
+ plus any active DAS sequence sources, or you can verify against a specific
+ source from one of the sub-menus.
+
+ - Envision2 Services
+ Submits one or more sequences, sequence IDs or database references to analysis workflows provided
+by the EnVision2
+web application. This allows Jalview users to easily access the EnCore network of
+databases and analysis services developed by members of ENFIN.
+
+ Selecting one of the following menu items starts a remote service
+ on compute facilities at the University of Dundee. You need a continuous network
+ connection in order to use these services through Jalview.
+
- Alignment
- ClustalW Multiple Sequence Alignment
@@ -20,8 +48,7 @@
with clustal W.
- ClustalW Multiple Sequence Alignment Realign
Submits the alignment or currently selected region for re-alignment
- with clustal W. Use this if you have added some new sequences to an existing
- alignment.
+ with clustal W. This enables you to align more sequences to an existing alignment.
- MAFFT Multiple Sequence Alignment
Submits all, or just the currently selected region for alignment with
MAFFT.