X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fmenus%2Fwsmenu.html;h=9dbfe8136f5a9df38deb7b57c59ecc1f86b6d142;hb=df22dee52c85b43767658a079c87172d79c0af06;hp=66f864c53059297e42731c9cd69e977a7a1b089e;hpb=c29c0a190d8095d8a0c646a59447cadaa2a5af55;p=jalview.git
diff --git a/help/html/menus/wsmenu.html b/help/html/menus/wsmenu.html
index 66f864c..9dbfe81 100755
--- a/help/html/menus/wsmenu.html
+++ b/help/html/menus/wsmenu.html
@@ -17,8 +17,11 @@
Submits the alignment or currently selected region for re-alignment
with clustal W. Use this if you have added some new sequences to an existing
alignment.
+
MAFFT Multiple Sequence Alignment
+ Submits all, or just the currently selected region for alignment with
+ MAFFT.
Muscle Multiple Protein Sequence Alignment
- Submits all, or jut the currently selected sequences for alignment
+ Submits all, or just the currently selected sequences for alignment
using Muscle. Do not use this if you are working with nucleic acid sequences.
@@ -36,8 +39,8 @@
detection and prediction.
If a set of sequences are selected, and they appear to be aligned,
then the alignment will be used for a Jnet prediction on the first
- sequence in the set (that is, the one that appears first in
- the alignment window).
+ sequence in the set (that is, the one that appears first in the alignment
+ window).