X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fna%2Findex.html;h=c906d521f6bce909a83e99b16e17797f947735d3;hb=48e022d36722b4af447dcdadfded6c00586186d2;hp=c247ab1210909e218ae5b996db78cf56f0cac5de;hpb=dfabc2facf04bc805f0b6001b94de3c62b3049b0;p=jalview.git diff --git a/help/html/na/index.html b/help/html/na/index.html index c247ab1..c906d52 100644 --- a/help/html/na/index.html +++ b/help/html/na/index.html @@ -1,14 +1,14 @@ + +

+ RNA Secondary Structure Visualization and Analysis
+ If a sequence or RNA alignment has secondary structure information, + the alignment will have a secondary structure line shown below it, and + a number of additional options become available: +

RNA + Helix colouring - highlights columns of alignment involved in + particular RNA helices.
Base Pair + Conservation Analysis - shown as a histogram and base-pair logo + below the alignment.
2D Structure + Visualization in VARNA - allows linked viewing of the consensus or + an individual sequence's structure

Limitations when working with RNA in Jalview
+ Currently, Jalview is not able to export RNA secondary structure annotation in any format other than Jalview annotation +
+ Jalview's RNA handling capabilities were introduced in v2.8 +