X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;fp=help%2Fhtml%2Freleases.html;h=a7963df5b4f1f8eeb63e4a4a79086310cf032828;hb=32254db18cc678b675db8d0cd72a525a6034bf01;hp=b8ad47c9e50f7687953205823fe9086d6eb8103a;hpb=136ceaaa8e6d5fe32255dda01f15d3d0024c066b;p=jalview.git
diff --git a/help/html/releases.html b/help/html/releases.html
index b8ad47c..a7963df 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -33,369 +33,536 @@
Issues Resolved
-
- |
-Application
-Support for JABAWS 2.0 Services (AACon alignment conservation, protein disorder and Clustal Omega)
-
-
-JABAWS server status indicator in Web Services preferences
-
-VARNA (http://varna.lri.fr) viewer for RNA structures in Jalview alignment window
-
-Updated jalview build and deploy framework for OSX mountain lion, windows 7, and 8
-
-Nucleotide substitution matrix for PCA that supports RNA and ambiguity codes
-
+ |
+ |
+ Application
+ Support for JABAWS 2.0 Services (AACon alignment
+ conservation, protein disorder and Clustal Omega)
+
+
+
+
+ JABAWS
+ server status indicator in Web Services preferences
+
+
+ VARNA
+ (http://varna.lri.fr) viewer for RNA structures in Jalview
+ alignment window
+
+
+ Updated
+ jalview build and deploy framework for OSX mountain lion, windows
+ 7, and 8
+
+ Nucleotide substitution matrix for PCA that supports RNA
+ and ambiguity codes
+
-Improved sequence database retrieval GUISupport fetching and database reference look up against multiple DAS sources
-
-Jalview project improvements- Store and retrieve the 'belowAlignment' flag for annotation
- calcId attribute to group annotation rows on the alignment
-- Store AACon calculation settings for a view in Jalview project
-
+ - Improved sequence database retrieval GUI
+ - Support fetching and database reference look up against
+ multiple DAS sources (Fetch all from in 'fetch db refs')
+
+ - Jalview project improvements
+
+ -
+ Store
+ and retrieve the 'belowAlignment' flag for annotation
+
+ -
+ calcId
+ attribute to group annotation rows on the alignment
+
+ -
+ Store
+ AACon calculation settings for a view in Jalview project
+
-
-
-- horizontal scrolling gesture support
-
-- Visual progress indicator when PCA calculation is running
-
-- Simpler JABA web services menus
-
-- visual indication that web service results are still being retrieved from server
-
-- Serialise the dialogs that are shown when jalview starts up for first time
-
-- Jalview user agent string for interacting with HTTP services
-
-- DAS 1.6 and DAS 2.0 source support using new JDAS client library
-
-
-Applet
-- RNA alignment and secondary structure annotation visualization applet example
-
-
-General
-- Normalise option for consensus sequence logo
-
-- Reset button in PCA window to return dimensions to defaults
-
-- Allow seqspace or Jalview variant of alignment PCA calculation
-
-- PCA with either nucleic acid and protein substitution matrices
-
- Allow windows containing HTML reports to be exported in HTML
-
-- Interactive display and editing of RNA secondary structure contacts
-
-- RNA Helix Alignment Colouring
-- RNA base pair logo consensus
-- Parse sequence associated secondary structure information in Stockholm files
-
-- HTML Export database accessions and annotation information presented in tooltip for sequences
-
-- Import secondary structure from LOCARNA clustalw style RNA alignment files
-
-- import and visualise T-COFFEE quality scores for an alignment
-
-- 'colour by annotation' per sequence option to shade each sequence according to its associated alignment annotation
-
-- New Jalview Logo
-
-
-Documentation and Development
-- documentation for score matrices used in Jalview
-
-- New Website!
-
-
- |
-Application
-- PDB, Unprot and EMBL (ENA) databases retrieved via wsdbfetch REST service
-
-- Stop windows being moved outside desktop on OSX
-
-- Filetype associations not installed for webstart launch
-
-- Jalview does not always retrieve progress of a JABAWS job execution in full once it is complete
-
-- revise SHMR RSBS definition to ensure alignment is uploaded via ali_file parameter
-
-- Jalview 2.7 is incompatible with Jmol-12.2.2
-
-- View all structures superposed fails with exception
-
-- Jnet job queues forever if a very short sequence is submitted for prediction
-
-- Cut and paste menu not opened when mouse clicked on desktop window
-
-- Putting fractional value into integer text box in alignment parameter dialog causes jalview to hang
-
-- Structure view highlighting doesn't work on windows 7
-
-- View all structures fails with exception shown in structure view
-
-- Characters in filename associated with PDBEntry not escaped in a platform independent way
-
-- Jalview desktop fails to launch with exception when using proxy
-
-- Tree calculation reports 'you must have 2 or more sequences selected' when selection is empty
-
-- Jalview desktop fails to launch with jar signature failure when java web start temporary file caching is disabled
-
-- DAS Sequence retrieval with range qualification results in sequence xref which includes range qualification
-
-- Errors during processing of command line arguments cause progress bar (JAL-898) to be removed
-
-- Replace comma for semi-colon option not disabled for DAS sources in sequence fetcher
-
-- Cannot close news reader when JABAWS server warning dialog is shown
-
-- Option widgets not updated to reflect user settings
-
-- Edited sequence not submitted to web service
-
-- Jalview 2.7 Webstart does not launch on mountain lion
-
-- InstallAnywhere installer doesn't unpack and run on OSX Mountain Lion
-
-- Annotation panel not given a scroll bar when sequences with alignment annotation are pasted into the alignment
-
-- Sequence associated annotation rows not associated when loaded from jalview project
-
-- Browser launch fails with NPE on java 1.7
-
-- JABAWS alignment marked as finished when job was cancelled or job failed due to invalid input
-
-- NPE with v2.7 example when clicking on Tree associated with all views
-
-- Exceptions when copy/paste sequences with grouped annotation rows to new window
-
-
-
-
-Applet
-- Sequence features are momentarily displayed before they are hidden using hidefeaturegroups applet parameter
-
-- loading features via javascript API automatically enables feature display
-
-- scrollToColumnIn javascript API method doesn't work
-
-
-General
-- Redundancy removal fails for rna alignment
-
-- PCA calculation fails when sequence has been selected and then deselected
-
-- PCA window shows grey box when first opened on OSX
-
-- Letters coloured pink in sequence logo when alignment coloured with clustalx
-
-- Choosing fonts without letter symbols defined causes exceptions and redraw errors
-
-- Initial PCA plot view is not same as manually reconfigured view
-
-- Grouped annotation graph label has incorrect line colour
-
-- Grouped annotation graph label display is corrupted for lots of labels
-
-
-
- |
-
- |
- |
- Application
-
- - Jalview Desktop News Reader
- - Tweaked default layout of web services menu
- - View/alignment association menu to enable user to easily
- specify which alignment a multi-structure view takes its
- colours/correspondences from
- - Allow properties file location to be specified as URL
- - Extend jalview project to preserve associations between
- many alignment views and a single Jmol display
- - Store annotation row height in jalview project file
- - Annotation row column label formatting attributes stored
- in project file
- - Annotation row order for auto-calculated annotation rows
- preserved in jalview project file
- - Visual progress indication when Jalview state is saved
- using Desktop window menu
- - Visual indication that command line arguments are still
- being processed
- - Groovy script execution from URL
- - Colour by annotation default min and max colours in
- preferences
- - Automatically associate PDB files dragged onto an
- alignment with sequences that have high similarity and matching
- IDs
- - Update JGoogleAnalytics to latest release (0.3)
- - 'view structures' option to open many structures
- in same window
- - Sort associated views menu option for tree panel
- - Group all JABA and non-JABA services for a particular
- analysis function in its own submenu
- Applet
-
- - Userdefined and autogenerated annotation rows for groups
- - Adjustment of alignment annotation pane height
- - Annotation scrollbar for annotation panel
- - Drag to reorder annotation rows in annotation panel
- - 'automaticScrolling' parameter
- - Allow sequences with partial ID string matches to be
- annotated from GFF/jalview features files
- - Sequence logo annotation row in applet
- - Absolute paths relative to host server in applet
- parameters are treated as such
- - New in the JalviewLite javascript API:
-
- - JalviewLite.js javascript library
- - Javascript callbacks for
-
- - Applet initialisation
- - Sequence/alignment mouse-overs and selections
-
-
- - scrollTo row and column alignment scrolling functions
- - Select sequence/alignment regions from javascript
- - javascript structure viewer harness to pass messages
- between Jmol and Jalview when running as distinct applets
- - sortBy method
- - Set of applet and application examples shipped with
- documentation
- - New example to demonstrate jalviewLite and Jmol
- javascript message exchange
-
- General
-
- - Enable Jmol displays to be associated with multiple
- multiple alignments
- - Option to automatically sort alignment with new tree
- - User configurable link to enable redirects to a
- www.jalview.org mirror
- - Jmol colours option for Jmol displays
- - Configurable newline string when writing alignment and
- other flat files
- - Allow alignment annotation description lines to contain
- html tags
- Documentation and Development
-
- - Add groovy test harness for bulk load testing to examples
-
- - Groovy script to load and align a set of sequences using a
- web service before displaying the result in the Jalview desktop
- - Restructured javascript and applet api documentation
- - Ant target to publish example html files with applet archive
- - Netbeans project for building jalview from source
- - ant task to create online javadoc for jalview source
- |
- Application
-
- - User defined colourscheme throws exception when current
- built in colourscheme is saved as new scheme
- - AlignFrame->Save in application pops up save dialog for
- valid filename/format
- - Cannot view associated structure for Uniprot sequence
- - PDB file association breaks for Uniprot sequence P37173
- - Associate PDB from file dialog does not tell you which
- sequence is to be associated with the file
- - Find All raises null pointer exception when query only
- matches sequence IDs
- - Pre 2.6 Jalview project cannot be loaded into v2.6
- - Jalview project with Jmol views created with Jalview 2.4
- cannot be loaded
- - Filetype associations not installed for webstart launch
- - Two or more chains in a single PDB file associated with
- sequences in different alignments do not get coloured by their
- associated sequence
- - Visibility status of autocalculated annotation row not
- preserved when project is loaded
- - Annotation row height and visibility attributes not stored
- in jalview project
- - Tree bootstraps are not preserved when saved as a jalview
- project
- - Envision2 workflow tooltips are corrupted
- - Enabling show group conservation also enables colour by
- conservation
- - Duplicate group associated conservation or consensus
- created on new view
- - Annotation scrollbar not displayed after 'show all
- hidden annotation rows' option selected
- - Alignment quality not updated after alignment annotation
- row is hidden then shown
- - Preserve colouring of structures coloured by sequences in pre
- jalview 2.7 projects
- - Web service job parameter dialog is not laid out properly
-
- - Web services menu not refreshed after 'reset
- services' button is pressed in preferences
- - Annotation off by one in jalview v2_3 example project
- - Structures imported from file and saved in project get
- name like jalview_pdb1234.txt when reloaded
- - Jalview does not always retrieve progress of a JABAWS job
- execution in full once it is complete
- Applet
-
- - Alignment height set incorrectly when lots of annotation
- rows are displayed
- - Relative URLs in feature HTML text not resolved to
- codebase
- - View follows highlighting does not work for positions in
- sequences
- - <= shown as = in tooltip
- - Export features raises exception when no features exist
- - Separator string used for serialising lists of IDs for
- javascript api is modified when separator string provided as
- parameter
- - Null pointer exception when selecting tree leaves for
- alignment with no existing selection
- - Relative URLs for datasources assumed to be relative to
- applet's codebase
- - Status bar not updated after finished searching and search
- wraps around to first result
- - StructureSelectionManager instance shared between several
- jalview applets causes race conditions and memory leaks
- - Hover tooltip and mouseover of position on structure not
- sent from Jmol in applet
- - Certain sequences of javascript method calls to applet API
- fatally hang browser
- General
-
- - View follows structure mouseover scrolls beyond position
- with wrapped view and hidden regions
- - Find sequence position moves to wrong residue with/without
- hidden columns
- - Sequence length given in alignment properties window is
- off by 1
- - InvalidNumberFormat exceptions thrown when trying to
- import PDB like structure files
- - Positional search results are only highlighted between
- user-supplied sequence start/end bounds
- - End attribute of sequence is not validated
- - Find dialog only finds first sequence containing a given
- sequence position
- - Sequence numbering not preserved in MSF alignment output
- - Jalview PDB file reader does not extract sequence from
- nucleotide chains correctly
- - Structure colours not updated when tree partition changed
- in alignment
- - Sequence associated secondary structure not correctly
- parsed in interleaved stockholm
- - Colour by annotation dialog does not restore current state
-
- - Hiding (nearly) all sequences doesn't work properly
- - Sequences containing lowercase letters are not properly
- associated with their pdb files
- Documentation and Development
-
- - schemas/JalviewWsParamSet.xsd corrupted by ApplyCopyright
- tool
- |
-
-
+
+
+
+ horizontal
+ scrolling gesture support
+
+ Visual progress indicator when PCA calculation is running
+
+ Simpler JABA web services menus
+
+
+ visual
+ indication that web service results are still being retrieved from
+ server
+
+
+ Serialise
+ the dialogs that are shown when jalview starts up for first time
+
+
+ Jalview
+ user agent string for interacting with HTTP services
+
+
+ DAS
+ 1.6 and DAS 2.0 source support using new JDAS client library
+
+ Applet
+
+ -
+ RNA
+ alignment and secondary structure annotation visualization applet
+ example
+
+
General
+
+ -
+ Normalise
+ option for consensus sequence logo
+
+ -
+ Reset
+ button in PCA window to return dimensions to defaults
+
+ -
+ Allow
+ seqspace or Jalview variant of alignment PCA calculation
+
+ -
+ PCA
+ with either nucleic acid and protein substitution matrices
+
-
+ Allow
+ windows containing HTML reports to be exported in HTML
+
+ -
+ Interactive
+ display and editing of RNA secondary structure contacts
+
+ - RNA Helix Alignment Colouring
+ - RNA base pair logo consensus
+ -
+ Parse
+ sequence associated secondary structure information in Stockholm
+ files
+
+ -
+ HTML
+ Export database accessions and annotation information presented in
+ tooltip for sequences
+
+ -
+ Import
+ secondary structure from LOCARNA clustalw style RNA alignment
+ files
+
+ -
+ import
+ and visualise T-COFFEE quality scores for an alignment
+
+ -
+ 'colour
+ by annotation' per sequence option to shade each sequence
+ according to its associated alignment annotation
+
+ -
+ New
+ Jalview Logo
+
+
Documentation and Development
+
+ -
+ documentation
+ for score matrices used in Jalview
+
+ - New Website!
+
+ Application
+
+ - PDB, Unprot and EMBL (ENA) databases retrieved via
+ wsdbfetch REST service
+
+ -
+
+ Stop
+ windows being moved outside desktop on OSX
+
+ -
+ Filetype
+ associations not installed for webstart launch
+
+ -
+ Jalview
+ does not always retrieve progress of a JABAWS job execution in
+ full once it is complete
+
+ -
+ revise
+ SHMR RSBS definition to ensure alignment is uploaded via ali_file
+ parameter
+
+ -
+ Jalview
+ 2.7 is incompatible with Jmol-12.2.2
+
+ -
+ View
+ all structures superposed fails with exception
+
+ -
+ Jnet
+ job queues forever if a very short sequence is submitted for
+ prediction
+
+ -
+ Cut
+ and paste menu not opened when mouse clicked on desktop window
+
+ -
+ Putting
+ fractional value into integer text box in alignment parameter
+ dialog causes jalview to hang
+
+ -
+ Structure
+ view highlighting doesn't work on windows 7
+
+ -
+ View
+ all structures fails with exception shown in structure view
+
+ -
+ Characters
+ in filename associated with PDBEntry not escaped in a platform
+ independent way
+
+ -
+ Jalview
+ desktop fails to launch with exception when using proxy
+
+ -
+ Tree
+ calculation reports 'you must have 2 or more sequences
+ selected' when selection is empty
+
+ -
+ Jalview
+ desktop fails to launch with jar signature failure when java web
+ start temporary file caching is disabled
+
+ -
+ DAS
+ Sequence retrieval with range qualification results in sequence
+ xref which includes range qualification
+
+ -
+ Errors
+ during processing of command line arguments cause progress bar
+ (JAL-898) to be removed
+
+ -
+ Replace
+ comma for semi-colon option not disabled for DAS sources in
+ sequence fetcher
+
+ -
+ Cannot
+ close news reader when JABAWS server warning dialog is shown
+
+ -
+ Option
+ widgets not updated to reflect user settings
+
+ -
+ Edited
+ sequence not submitted to web service
+
+ -
+ Jalview
+ 2.7 Webstart does not launch on mountain lion
+
+ -
+ InstallAnywhere
+ installer doesn't unpack and run on OSX Mountain Lion
+
+ -
+ Annotation
+ panel not given a scroll bar when sequences with alignment
+ annotation are pasted into the alignment
+
+ -
+ Sequence
+ associated annotation rows not associated when loaded from jalview
+ project
+
+ -
+ Browser
+ launch fails with NPE on java 1.7
+
+ -
+ JABAWS
+ alignment marked as finished when job was cancelled or job failed
+ due to invalid input
+
+ -
+ NPE
+ with v2.7 example when clicking on Tree associated with all views
+
+ -
+ Exceptions
+ when copy/paste sequences with grouped annotation rows to new
+ window
+
+ Applet
+
+ -
+ Sequence
+ features are momentarily displayed before they are hidden using
+ hidefeaturegroups applet parameter
+
+ -
+ loading
+ features via javascript API automatically enables feature display
+
+ -
+ scrollToColumnIn
+ javascript API method doesn't work
+
+ General
+
+ -
+ Redundancy
+ removal fails for rna alignment
+
+ -
+ PCA
+ calculation fails when sequence has been selected and then
+ deselected
+
+ -
+ PCA
+ window shows grey box when first opened on OSX
+
+ -
+ Letters
+ coloured pink in sequence logo when alignment coloured with
+ clustalx
+
+ -
+ Choosing
+ fonts without letter symbols defined causes exceptions and redraw
+ errors
+
+ -
+ Initial
+ PCA plot view is not same as manually reconfigured view
+
+ -
+ Grouped
+ annotation graph label has incorrect line colour
+
+ -
+ Grouped
+ annotation graph label display is corrupted for lots of labels
+
+
+ |
+
+ |
+
+ |
+ Application
+
+ - Jalview Desktop News Reader
+ - Tweaked default layout of web services menu
+ - View/alignment association menu to enable user to easily
+ specify which alignment a multi-structure view takes its
+ colours/correspondences from
+ - Allow properties file location to be specified as URL
+ - Extend jalview project to preserve associations between
+ many alignment views and a single Jmol display
+ - Store annotation row height in jalview project file
+ - Annotation row column label formatting attributes stored
+ in project file
+ - Annotation row order for auto-calculated annotation rows
+ preserved in jalview project file
+ - Visual progress indication when Jalview state is saved
+ using Desktop window menu
+ - Visual indication that command line arguments are still
+ being processed
+ - Groovy script execution from URL
+ - Colour by annotation default min and max colours in
+ preferences
+ - Automatically associate PDB files dragged onto an
+ alignment with sequences that have high similarity and matching
+ IDs
+ - Update JGoogleAnalytics to latest release (0.3)
+ - 'view structures' option to open many structures
+ in same window
+ - Sort associated views menu option for tree panel
+ - Group all JABA and non-JABA services for a particular
+ analysis function in its own submenu
+ Applet
+
+ - Userdefined and autogenerated annotation rows for groups
+ - Adjustment of alignment annotation pane height
+ - Annotation scrollbar for annotation panel
+ - Drag to reorder annotation rows in annotation panel
+ - 'automaticScrolling' parameter
+ - Allow sequences with partial ID string matches to be
+ annotated from GFF/jalview features files
+ - Sequence logo annotation row in applet
+ - Absolute paths relative to host server in applet
+ parameters are treated as such
+ - New in the JalviewLite javascript API:
+
+ - JalviewLite.js javascript library
+ - Javascript callbacks for
+
+ - Applet initialisation
+ - Sequence/alignment mouse-overs and selections
+
+
+ - scrollTo row and column alignment scrolling functions
+ - Select sequence/alignment regions from javascript
+ - javascript structure viewer harness to pass messages
+ between Jmol and Jalview when running as distinct applets
+ - sortBy method
+ - Set of applet and application examples shipped with
+ documentation
+ - New example to demonstrate jalviewLite and Jmol
+ javascript message exchange
+
+ General
+
+ - Enable Jmol displays to be associated with multiple
+ multiple alignments
+ - Option to automatically sort alignment with new tree
+ - User configurable link to enable redirects to a
+ www.jalview.org mirror
+ - Jmol colours option for Jmol displays
+ - Configurable newline string when writing alignment and
+ other flat files
+ - Allow alignment annotation description lines to contain
+ html tags
+ Documentation and Development
+
+ - Add groovy test harness for bulk load testing to examples
+
+ - Groovy script to load and align a set of sequences using a
+ web service before displaying the result in the Jalview desktop
+ - Restructured javascript and applet api documentation
+ - Ant target to publish example html files with applet
+ archive
+ - Netbeans project for building jalview from source
+ - ant task to create online javadoc for jalview source
+ |
+ Application
+
+ - User defined colourscheme throws exception when current
+ built in colourscheme is saved as new scheme
+ - AlignFrame->Save in application pops up save dialog for
+ valid filename/format
+ - Cannot view associated structure for Uniprot sequence
+ - PDB file association breaks for Uniprot sequence P37173
+ - Associate PDB from file dialog does not tell you which
+ sequence is to be associated with the file
+ - Find All raises null pointer exception when query only
+ matches sequence IDs
+ - Pre 2.6 Jalview project cannot be loaded into v2.6
+ - Jalview project with Jmol views created with Jalview 2.4
+ cannot be loaded
+ - Filetype associations not installed for webstart launch
+ - Two or more chains in a single PDB file associated with
+ sequences in different alignments do not get coloured by their
+ associated sequence
+ - Visibility status of autocalculated annotation row not
+ preserved when project is loaded
+ - Annotation row height and visibility attributes not stored
+ in jalview project
+ - Tree bootstraps are not preserved when saved as a jalview
+ project
+ - Envision2 workflow tooltips are corrupted
+ - Enabling show group conservation also enables colour by
+ conservation
+ - Duplicate group associated conservation or consensus
+ created on new view
+ - Annotation scrollbar not displayed after 'show all
+ hidden annotation rows' option selected
+ - Alignment quality not updated after alignment annotation
+ row is hidden then shown
+ - Preserve colouring of structures coloured by sequences in
+ pre jalview 2.7 projects
+ - Web service job parameter dialog is not laid out properly
+
+ - Web services menu not refreshed after 'reset
+ services' button is pressed in preferences
+ - Annotation off by one in jalview v2_3 example project
+ - Structures imported from file and saved in project get
+ name like jalview_pdb1234.txt when reloaded
+ - Jalview does not always retrieve progress of a JABAWS job
+ execution in full once it is complete
+ Applet
+
+ - Alignment height set incorrectly when lots of annotation
+ rows are displayed
+ - Relative URLs in feature HTML text not resolved to
+ codebase
+ - View follows highlighting does not work for positions in
+ sequences
+ - <= shown as = in tooltip
+ - Export features raises exception when no features exist
+ - Separator string used for serialising lists of IDs for
+ javascript api is modified when separator string provided as
+ parameter
+ - Null pointer exception when selecting tree leaves for
+ alignment with no existing selection
+ - Relative URLs for datasources assumed to be relative to
+ applet's codebase
+ - Status bar not updated after finished searching and search
+ wraps around to first result
+ - StructureSelectionManager instance shared between several
+ jalview applets causes race conditions and memory leaks
+ - Hover tooltip and mouseover of position on structure not
+ sent from Jmol in applet
+ - Certain sequences of javascript method calls to applet API
+ fatally hang browser
+ General
+
+ - View follows structure mouseover scrolls beyond position
+ with wrapped view and hidden regions
+ - Find sequence position moves to wrong residue with/without
+ hidden columns
+ - Sequence length given in alignment properties window is
+ off by 1
+ - InvalidNumberFormat exceptions thrown when trying to
+ import PDB like structure files
+ - Positional search results are only highlighted between
+ user-supplied sequence start/end bounds
+ - End attribute of sequence is not validated
+ - Find dialog only finds first sequence containing a given
+ sequence position
+ - Sequence numbering not preserved in MSF alignment output
+ - Jalview PDB file reader does not extract sequence from
+ nucleotide chains correctly
+ - Structure colours not updated when tree partition changed
+ in alignment
+ - Sequence associated secondary structure not correctly
+ parsed in interleaved stockholm
+ - Colour by annotation dialog does not restore current state
+
+ - Hiding (nearly) all sequences doesn't work properly
+ - Sequences containing lowercase letters are not properly
+ associated with their pdb files
+ Documentation and Development
+
+ - schemas/JalviewWsParamSet.xsd corrupted by ApplyCopyright
+ tool
+ |
+
+
|
|