X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;fp=help%2Fhtml%2Freleases.html;h=b58cb31ab448eecead8fdb9f141e490fb3aae856;hb=4992ecae64d0c987c217e8c584161706188f9d52;hp=067363ab04dba6e84ebb2eeb7339dc6ddcfee12f;hpb=5ef89ac7a5639c8de9769038285db42871cf6ec6;p=jalview.git
diff --git a/help/html/releases.html b/help/html/releases.html
index 067363a..b58cb31 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -90,6 +90,10 @@ li:before {
attributes from VCF file, or key-value pairs imported from
column 9 of GFF file)
+ Show synonymous codon variants on peptide sequences
+
+ Popup report of a selected sequence feature's details
+
More efficient sequence feature render
algorithm (Z-sort/transparency and filter aware)
@@ -125,6 +129,10 @@ li:before {
Scale panel popup menu allows Hide selected columns adjacent
to a hidden column marker
+
+ Can use shift + arrow keys to rotate PCA image incrementally
+
+ PCA depth queuing with graduated colours
Deprecations
@@ -145,7 +153,7 @@ li:before {
IntervalStoreJ (new updatable NCList
implementation) used for Sequence Feature collections
-
- Castor library for XML marshalling and
+ Castor library for XML marshalling and
unmarshalling has been replaced by JAXB for Jalview projects
and XML based data retrieval clients
@@ -175,7 +183,7 @@ li:before {
Jalview hangs when closing windows
or the overview updates with large alignments
- Tree and PCA calculation fails for selected
+ Tree and PCA calculation fails for selected
region if columns were selected by dragging right-to-left
and the mouse moved to the left of the first column
@@ -185,25 +193,25 @@ li:before {
Nonpositional features lose feature group
on export as Jalview features file
- Status bar updates beyond visible columns
-
Blank extra columns drawn or
printed when columns are hidden
- Regular expression error in Select Columns by Annotation description
+ Regular expression error for '(' in Select Columns by Annotation description
Scroll doesn't stop on mouse up after
dragging out of Scale or Annotation Panel
- Display is incorrect after Page Down and Up in wrapped mode
+ Column selection incorrect after scrolling out of scale panel
- Help page can be opened twice
+ Left/right drag in annotation can scroll alignment down
- Finder doesn't skip hidden regions
+ Error if mouse moved before clicking Reveal in scale panel
- Column selection incorrect after scrolling out of scale panel
+ Column display is out by one after Page Down, Page Up in wrapped mode
+
+ Finder doesn't skip hidden regions
- Tree calculation fails on a selection dragged to left of alignment
+ Finder searches in minimised alignments
'Apply Colour to All Groups' not always selected on
opening an alignment
@@ -213,7 +221,27 @@ li:before {
Per-group Clustal colour scheme changes when
different groups in the alignment are selected
+ Internationalised colour scheme names not shown correctly in menu
+
+ Colour by Annotation can go black at min/max threshold limit
+
Value input for graduated feature colour threshold gets 'unrounded'
+
+ PCA image export doesn't respect background colour
+
+ PCA points don't dim when rotated about y axis
+
+ PCA Print dialog continues after Cancel
+
+ Cancel in Tree Font dialog resets alignment, not Tree font
+
+ Associate Tree with All Views not restored from project file
+
+ Scrolling of split frame is sluggish if Overview shown in complementary view
+
+ stop_gained variants not shown correctly on peptide sequence
+
+ Help page can be opened twice
Editing