X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;h=0e7d02d3fc24282ccc0c4a236c70139c22b52122;hb=2c2992b8822b686f7f12022a66aa41f6969d06d0;hp=25830822b6630f5880288f73c4c9937a0370ad5f;hpb=54df37fffa15c0fe522b96ba5a443f3ba21e54d3;p=jalview.git

diff --git a/help/html/releases.html b/help/html/releases.html
index 2583082..0e7d02d 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -53,6 +53,7 @@
       <td><em>General</em>
         <ul>
             <li><!-- JAL---></li>
+            <li><!-- JAL-192 --->Alignment ruler shows positions relative to reference sequence</li>
         </ul> <em>Application</em>
         <ul>
             <li><!-- JAL---></li>
@@ -60,6 +61,7 @@
             <li><!-- JAL-1855, JAL-2113, JAL-2114-->Upgrade to EMBL XML 1.2 for ENA record retrieval</li>
             <li><!--  JAL 1812 -->New 'execute Groovy script' option in an alignment window's Calculate menu</li>
             <li><!--  JAL 1812 -->Allow groovy scripts that call Jalview.getAlignFrames() to run in headless mode</li>
+            <li><!-- JAL-1369 --->Store/restore reference sequence in Jalview projects</li>
              
         </ul> <em>Applet</em>
         <ul>
@@ -77,7 +79,7 @@
             <li><!-- JAL-2072  -->Feature based tree calculation not shown for DNA alignments</li>
             <li><!-- JAL-2075  -->Hidden columns ignored during feature based tree calculation</li>
             <li><!-- JAL-2065  -->Alignment view stops updating when show unconserved enabled for group on alignment</li>
-            
+            <li><!--  JAL-2086  -->Cannot insert gaps into sequence when set as reference</li>
             
           </ul>
           <em>Application</em>
@@ -87,6 +89,9 @@
             <li><!-- JAL-1552-->URLs and links can imported by drag'n'drop on OSX webstart</li>
             <li><!-- JAL-2030-->InstallAnywhere distribution fails when launching Chimera</li>
             <li><!-- JAL-2080-->Jalview very slow to launch via webstart (also hotfix for 2.9.0b2)</li>
+            <li><!--  JAL-2085  -->Cannot save project when view has a reference sequence defined</li>
+            <li><!--  JAL-1011  -->Columns are suddenly selected in other alignments and views when revealing hidden columns</li>
+            <li><!--  JAL-1989  -->Hide columns not mirrored in complement view in a cDNA/Protein splitframe</li>
             <!--  may exclude, this is an external service stability issue  JAL-1941 /> RNA 3D structure not added via DSSR service</li> -->
           </ul>
           <em>Applet</em>