X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;h=0fba08a635bc7d6afe0e37a928781aa25f40be9b;hb=a3ca1aac6c00fc2240fa21be9df43adcc1b964ff;hp=9c4c9edcdde13b99b2dac9030c6f24e6e2e973d0;hpb=0e575263043797b2e9bbd74386cd5851c09433af;p=jalview.git
diff --git a/help/html/releases.html b/help/html/releases.html
index 9c4c9ed..0fba08a 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -67,16 +67,83 @@ li:before {
+
+
+
+ |
+
+ Deprecations
+
+ -
+ DAS sequence retrieval and annotation
+ capabilities removed from the Jalview Desktop
+
+
+ Release Processes
+
+ - Atlassian Bamboo continuous integration server for unattended Test Suite execution
+ - Memory test suite to detect leaks in common operations
+
+ |
+
+
+
+ -
+ Jalview hangs when closing windows
+ or the overview updates with large alignments.
+
+ -
+ Tree and PCA calculation fails for selected
+ region if columns were selected by dragging right-to-left
+ and the mouse moved to the left of the first column.
+
+ -
+ Error message for trying to load in invalid
+ URLs doesn't tell users the invalid URL
+
+
+ Editing
+
+ -
+ Start and End should be updated when
+ sequence data at beginning or end of alignment added/removed
+ via 'Edit' sequence
+
+ -
+ Delete/Cut selection doesn't relocate
+ sequence features correctly when start of sequence is
+ removed (Known defect since 2.10)
+
+ -
+
+
+
+ New Known Defects
+
+ -
+ Nonpositional features lose feature group
+ on export as jalview features file
+
+
+ |
+
|
-
+ Default memory for Jalview webstart and
+ InstallAnywhere increased to 1G.
+
+ -
Hidden sequence markers and representative
sequence bolding included when exporting alignment as EPS,
SVG, PNG or HTML. Display is configured via the
@@ -85,7 +152,7 @@ li:before {
-
Ensembl client updated to Version 7 REST
- API and sequence data now imported as JSON
+ API and sequence data now imported as JSON.
-
Change in recommended way of starting
@@ -107,6 +174,20 @@ li:before {
-
+ Poorly scaled bar in quality annotation
+ row shown in Feredoxin Structure alignment view of example
+ alignment.
+
+ -
+ Annotation obscures sequences if lots of
+ annotation displayed.
+
+ -
+ Group conservation/consensus not shown
+ for newly created group when 'Apply to all groups'
+ selected
+
+ -
Corrupted display when switching to
wrapped mode when sequence panel's vertical scrollbar is
visible.
@@ -121,33 +202,47 @@ li:before {
-
Jalview could hang when importing certain
- types of knotted RNA secondary structure
+ types of knotted RNA secondary structure.
-
Sequence highlight and selection in
trimmed VARNA 2D structure is incorrect for sequences that
- do not start at 1
+ do not start at 1.
-
'.' inserted into RNA secondary structure
annotation when columns are inserted into an alignment,
- and when exporting as Stockolm flatfile.
+ and when exporting as Stockholm flatfile.
-
Jalview annotation rows containing upper
and lower-case 'E' and 'H' do not automatically get
- treated as RNA secondary structure
+ treated as RNA secondary structure.
+
+ -
+ .jvp should be used as default extension
+ (not .jar) when saving a jalview project file.
+
+ -
+ Mac Users: closing a window correctly
+ transfers focus to previous window on OSX
- Java 10 Issues
+ Java 10 Issues Resolved
-
OSX - Can't save new files via the File
or export menus by typing in a name into the Save dialog
box.
+ -
+ Jalview now uses patched version
+ of the VAqua5
+ 'look and feel' which has improved compatibility with the
+ latest version of OSX.
+
-
+
|