X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;h=11c7f58d39ee4488ccf4080d6ecc9ed3dac24686;hb=62cdf4a06bef088c02f81c66ab2fe0bc3264e321;hp=f29f708683f2c81f89be47e2cac823632e9c73dc;hpb=21c2deb35c435e6097b0f05c83d21cfdf4929ba2;p=jalview.git
diff --git a/help/html/releases.html b/help/html/releases.html
index f29f708..11c7f58 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -47,12 +47,44 @@
+ |
+ Application
+
+ - 3D Structure chooser opens with 'Cached structures' view if structures already loaded
+ |
+
+
+ Application
+
+ - Cannot import or associated local PDB files without a PDB ID HEADER line
+ - RMSD is not output in Jmol console when superposition is performed
+ - Drag and drop of URL from Browser fails for Linux and OSX versions earlier than El Capitan
+ - ENA client ignores invalid content from ENA server
+ - Exceptions are not raised when ENA client attempts to fetch non-existent IDs via Fetch DB Refs UI option
+ - Exceptions are not raised when a new view is created on the alignment
+
+ New Known Issues
+ - Drag and drop from URL links in browsers do not work on Windows
+ Build and deployment
+ - URL link checker now copes with multi-line anchor tags
+
+ |
+
+
+
+
|
General
-
+ Updated Spanish translations.
+
+ -
Jmol now primary parser
for importing structure data to Jalview. Enables mmCIF and
better PDB parsing.
@@ -204,19 +236,21 @@
sequences
-
-
+ Improved warning messages when DB
+ Ref Fetcher fails to match, or otherwise updates sequence
+ data from external database records.
-
-
+ Revised Jalview Project format for
+ efficient recovery of sequence coding and alignment
+ annotation relationships.
-
-
- Applet
+
+ -- JAL---
- |
+ -->
General
@@ -338,28 +372,21 @@
Quality and Conservation are now shown on
load even when Consensus calculation is disabled
-
-
-
-
-
-
-
-
-
Application
-
-
+ URLs and links can't be imported by
+ drag'n'drop on OSX when launched via webstart (note - not
+ yet fixed for El Capitan)
-
Corrupt preferences for SVG, EPS & HTML
output when running on non-gb/us i18n platforms
-
- URLs and links can imported by drag'n'drop
- on OSX webstart
+ Error thrown when exporting a view with
+ hidden sequences as flat-file alignment
-
InstallAnywhere distribution fails when
@@ -430,7 +457,7 @@
-
Enable 'Get Cross-References' in menu
- after fetching cross-references
+ after fetching cross-references, and restoring from project
-
Mouseover of a copy of a sequence is not
@@ -456,7 +483,7 @@
-
Only offer PDB structures in structure
- viewer based on sequence name, PDB and Uniprot
+ viewer based on sequence name, PDB and UniProt
cross-references
@@ -465,11 +492,6 @@
alignment as HTML
-
- Improved warning messages when
- DB Ref Fetcher fails to match, or otherwise updates
- sequence data from external database records.
-
- -
Structures not always superimposed after
multiple structures are shown for one or more sequences.
@@ -496,14 +518,8 @@
Incorrect start and end reported for PDB
to sequence mapping in 'View Mappings' report
- -
-
-
- -
-
-
-
-
+
Applet
@@ -1800,6 +1816,9 @@
regular-expression based URL links (applet and application)
+
+
+
- Non-positional feature URL links are shown in link
menu
@@ -2254,6 +2273,9 @@
- User-defined sub-tree colours and sub-tree selection
+
+
+
- 'New Window' button on the 'Output to Text box'
@@ -2270,6 +2292,9 @@
Slowed DAS Feature Fetching for increased robustness.
+
+
+
Made angle brackets in ASCII feature descriptions
display correctly
@@ -2283,6 +2308,9 @@
Smooth fonts switch moved to FontChooser dialog box.
+
+
+
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