X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;h=2b835454dd1e0c58ad453357a68a07332272a624;hb=06fb1b18865c75aa78186970e74392058444fde4;hp=2ebb6f01b8467695c9cf68d5de8c1461d459556c;hpb=c8a5e950de2892a1637ca720afdba3eefc62a718;p=jalview.git

diff --git a/help/html/releases.html b/help/html/releases.html
index 2ebb6f0..2b83545 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -77,9 +77,9 @@ li:before {
           <em></em>
           <ul>
             <li>
-              <!-- JAL-1847 JAL-2944 -->Structure Chooser controls to
-              control superposition of multiple structures and open
-              structures in existing views
+              <!-- JAL-1847 JAL-2944 -->New Structure Chooser control
+              for disabling automatic superposition of multiple
+              structures and open structures in existing views
             </li>
             <li>
               <!-- JAL-984 -->Mouse cursor changes to indicate Sequence
@@ -96,7 +96,7 @@ li:before {
             </li>
             <li>
               <!-- JAL-2593 -->Improved performance when rendering lots
-              of features
+              of features (particularly when transparency is disabled)
             </li>
           </ul>
           </div>
@@ -112,6 +112,16 @@ li:before {
               overlapping alignment panel
             </li>
             <li>
+              <!--  JAL-2929 -->overview doesn't show end of unpadded
+              sequence as gaps
+            </li>
+            <li>
+              <!-- JAL-2789, JAL-2893 -->Cross-reference handling improved: CDS not handled correctly if transcript has no UTR
+            </li>
+            <li>
+            
+            </li>
+            <li>
               <!-- JAL-2666 -->Linked scrolling via protein horizontal
               scroll bar doesn't work for some CDS/Protein views
             </li>
@@ -146,6 +156,10 @@ li:before {
               as generated by CONSURF)
             </li>
             <li>
+              <!-- JAL-2922 -->Invert displayed features very slow when
+              structure and/or overview windows are also shown
+            </li>
+            <li>
               <!-- JAL-2954 -->Selecting columns from highlighted regions
               very slow for alignments with large numbers of sequences
             </li>
@@ -154,11 +168,13 @@ li:before {
               with 'StringIndexOutOfBounds'
             </li>
             <li>
-              <!-- JAL-2976 -->VAqua(4) (<a
-              href="http://violetlib.org/vaqua/overview.html">download
-                here</a>) provided as fallback Look and Feel for OSX
+              <!-- JAL-2976 -->VAqua(4) provided as fallback Look and Feel for OSX
               platforms running Java 10
             </li>
+            <li>
+              <!-- JAL-2960 -->Adding a structure to existing structure
+              view appears to do nothing because the view is hidden behind the alignment view
+            </li>
           </ul>
           <em>Applet</em>
           <ul>
@@ -166,7 +182,12 @@ li:before {
               <!-- JAL-2926 -->Copy consensus sequence option in applet
               should copy the group consensus when popup is opened on it
             </li>
-
+          </ul>
+          <em>Batch Mode</em>
+          <ul>
+          <li>
+            <!-- JAL-2913 -->Fixed ID width preference is not respected
+          </li>
           </ul>
           <em>New Known Defects</em>
           <ul>