X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;h=2b835454dd1e0c58ad453357a68a07332272a624;hb=06fb1b18865c75aa78186970e74392058444fde4;hp=68cd19820ba4e596f55289f7aabb98f0e2e0589f;hpb=ac9df763f29e877bd1f64f68b18e5bf143bd11de;p=jalview.git
diff --git a/help/html/releases.html b/help/html/releases.html
index 68cd198..2b83545 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -70,19 +70,33 @@ li:before {
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-
- Mouse cursor changes to indicate Sequence ID and annotation area margins can be click-dragged to adjust them.
+ New Structure Chooser control
+ for disabling automatic superposition of multiple
+ structures and open structures in existing views
+
+ -
+ Mouse cursor changes to indicate Sequence
+ ID and annotation area margins can be click-dragged to
+ adjust them.
+
+ -
+ Jalview uses HTTPS for Uniprot, Xfam and
+ Ensembl services
+
-
- Jalview uses HTTPS for Uniprot, Xfam and Ensembl services
+ Improved performance for large alignments
+ and lots of hidden columns
-
- Improved performance for large alignments and lots of hidden columns
+ Improved performance when rendering lots
+ of features (particularly when transparency is disabled)
@@ -90,14 +104,111 @@ li:before {
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-
- Slow redraw when Overview panel shown overlapping alignment panel
+ Structure and Overview aren't updated
+ when Colour By Annotation threshold slider is adjusted
+
+ -
+ Slow redraw when Overview panel shown
+ overlapping alignment panel
+
+ -
+ overview doesn't show end of unpadded
+ sequence as gaps
+
+ -
+ Cross-reference handling improved: CDS not handled correctly if transcript has no UTR
+
+ -
+
+
+ -
+ Linked scrolling via protein horizontal
+ scroll bar doesn't work for some CDS/Protein views
+
+ -
+ Trackpad scrolling is broken on OSX on
+ Java 1.8u153 onwards and Java 1.9u4+.
+
+ -
+ Tooltip shouldn't be displayed for empty
+ columns in annotation row
+
+ -
+ Preferences panel's ID Width control is
+ honored in interactive and batch mode
+
+ -
+ Linked sequence highlighting doesn't work
+ for structures added to existing Jmol view
+
+ -
+ 'View Mappings' includes duplicate
+ entries after importing project with multiple views
+
+ -
+ Viewing or annotating Uniprot
+ protein sequences via SIFTS from associated PDB entries
+ with negative residue numbers or missing residues fails
+
+ -
+ Exception when shading sequence with negative
+ Temperature Factor values from annotated PDB files (e.g.
+ as generated by CONSURF)
-
- Linked scrolling via protein horizontal scroll bar doesn't work for some CDS/Protein views
+ Invert displayed features very slow when
+ structure and/or overview windows are also shown
+
+ -
+ Selecting columns from highlighted regions
+ very slow for alignments with large numbers of sequences
+
+ -
+ Copy Consensus fails for group consensus
+ with 'StringIndexOutOfBounds'
+
+ -
+ VAqua(4) provided as fallback Look and Feel for OSX
+ platforms running Java 10
+
+ -
+ Adding a structure to existing structure
+ view appears to do nothing because the view is hidden behind the alignment view
-
- |
+ Applet
+
+ -
+ Copy consensus sequence option in applet
+ should copy the group consensus when popup is opened on it
+
+
+ Batch Mode
+
+ -
+ Fixed ID width preference is not respected
+
+
+ New Known Defects
+
+ -
+ Exceptions occasionally raised when
+ editing a large alignment and overview is displayed
+
+ -
+ 'Overview updating' progress bar is shown
+ repeatedly after a series of edits even when the overview
+ is no longer reflecting updates
+
+ -
+ 'SIFTS Mapping Error' when viewing
+ structures for protein subsequence (if 'Trim Retrieved
+ Sequences' enabled) or Ensembl isoforms (Workaround in
+ 2.10.4 is to fail back to N&W mapping)
+
+
+
+
|