X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;h=3e701f93b46d038c07e907ba2a85de5980877825;hb=11ca0240a5792724d5e890de9fbd63cb2f11093a;hp=bcf5987635c4688462b2c3e489511212085e3cbd;hpb=fb5b7e9a21dfc9d41b63e80c597f383afe1ad28c;p=jalview.git
diff --git a/help/html/releases.html b/help/html/releases.html
index bcf5987..3e701f9 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -71,7 +71,7 @@ li:before {
2.10.3
- 10/10/2017
+ 17/11/2017
|
@@ -89,11 +89,37 @@ li:before {
Structure views don't get updated unless
their colours have changed
+ All linked sequences are highlighted for a structure mousover (Jmol) or selection (Chimera)
+ 'Cancel' button in progress bar for JABAWS AACon, RNAAliFold and Disorder prediction jobs
+
+
+ Stop codons are excluded in CDS/Protein view from Ensembl locus cross-references
+ Start/End limits are shown in Pairwise Alignment report
+ Sequence fetcher's Free text 'autosearch' feature can be disabled
+ Retrieve IDs tab added for UniProt and PDB easier retrieval of sequences for lists of IDs
+ Short names for sequences retrieved from Uniprot
+
+ Scripting
+
+ - Groovy interpreter updated to 2.4.12
+ - Example groovy script for generating a matrix of percent identity scores for current alignment.
+
+ Testing and Deployment
+
+ - Test to catch memory leaks in Jalview UI
- - Example groovy script for generating a matrix of percent identity scores for current alignment.
+
|
-
+ General
+
+ - Pressing tab after updating the colour threshold text field doesn't trigger an update to the alignment view
+ - Race condition when parsing sequence ID strings in parallel
+ - Overview windows are also closed when alignment window is closed
+ - Export of features doesn't always respect group visibility
+ - Jumping from column 1 to column 100,000 takes a long time in Cursor mode
+
+ Desktop
- Structures with whitespace chainCode cannot be viewed in Chimera
- Protein annotation panel too high in CDS/Protein view
@@ -101,19 +127,52 @@ li:before {
- Can't edit the query after the server error warning icon is shown in Uniprot and PDB Free Text Search Dialogs
- Slow EnsemblGenome ID lookup
- - Race condition when parsing sequence ID strings in parallel
+ - Revised Ensembl REST API CDNA query
- Hidden column marker in last column not rendered when switching back from Wrapped to normal view
- Annotation display corrupted when scrolling right in unwapped alignment view
- Existing features on subsequence incorrectly relocated when full sequence retrieved from database
- - Overview windows are also closed when alignment window is closed
- Last reported memory still shown when Desktop->Show Memory is unticked (OSX only)
- Amend Features dialog doesn't allow features of same type and group to be selected for amending
- Jalview becomes sluggish in wide alignments when hidden columns are present
+ - Jalview freezes when loading and displaying several structures
+ - Black outlines left after resizing or moving a window
+ - Unable to minimise windows within the Jalview desktop on OSX
+ - Mouse wheel doesn't scroll vertically when in wrapped alignment mode
+ - Scale mark not shown when close to right hand end of alignment
+ - Pairwise alignment of selected regions of each selected sequence do not have correct start/end positions
+ - Alignment ruler height set incorrectly after canceling the Alignment Window's Font dialog
+ - Show cross-references not enabled after restoring project until a new view is created
+ - Warning popup about use of SEQUENCE_ID in URL links appears when only default EMBL-EBI link is configured (since 2.10.2b2)
+ - Overview redraws whole window when box position is adjusted
+ - Structure viewer doesn't map all chains in a multi-chain structure when viewing alignment involving more than one chain (since 2.10)
+ - Double residue highlights in cursor mode if new selection moves alignment window
+ - Alignment vanishes when using arrow key in cursor mode to pass hidden column marker
- Applet
+ > Applet
- Concurrent modification exception when closing alignment panel
+ BioJSON
+
+ -
+ BioJSON export does not preserve non-positional features
+
+
+ New Known Issues
+
+ - Delete/Cut selection doesn't relocate sequence features correctly (for many previous versions of Jalview)
+ - Cursor mode unexpectedly scrolls when using cursor in wrapped panel other than top
+ - Select columns containing feature ignores graduated colour threshold
+ - Edit sequence operation doesn't always preserve numbering and sequence features
+
+ Known Java 9 Issues
+
+ - Groovy Console very slow to open and is
+ not responsive when entering characters (Webstart, Java 9.01,
+ OSX 10.10)
+
+
+
|