X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;h=475a8da04c862bc642fe85654cbf1ff5ea7a68b7;hb=ac93424cd4c19aa35f7831e4f3da7bbcaf6baf15;hp=2c8bb3bb2ef2d5e77441728c6c6af4ac2adcb6d0;hpb=8528d35fee804d5350b8c0365a86b4d9200ba12d;p=jalview.git
diff --git a/help/html/releases.html b/help/html/releases.html
index 2c8bb3b..475a8da 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -55,6 +55,8 @@
Jmol now primary parser for importing structure data to Jalview. Enables mmCIF and better PDB parsing.
Alignment ruler shows positions relative to reference sequence
Position/residue shown in status bar when mousing over sequence associated annotation
+ Default RNA SS symbol to 'matching bracket' for manual entry
+ RNA Structure consensus indicates wc-only '()', canonical '[]' and invalid '{}' base pair populations for each column
Application
@@ -67,8 +69,10 @@
- Show residue labels in Chimera when mousing over sequences in Jalview
- Support for reverse-complement coding regions in ENA and EMBL
- Upgrade to EMBL XML 1.2 for ENA record retrieval
- - New 'execute Groovy script' option in an alignment window's Calculate menu
- - Allow groovy scripts that call Jalview.getAlignFrames() to run in headless mode
+ - Support for ENA CDS records with reverse complement operator
+ - New 'execute Groovy script' option in an alignment window's Calculate menu
+ - Allow groovy scripts that call Jalview.getAlignFrames() to run in headless mode
+ - Support for creating new alignment calculation workers from groovy scripts
- Store/restore reference sequence in Jalview projects
- Chain codes for a sequence's PDB associations are now saved/restored from project
- Double click on an entry in Jalview's database chooser opens a sequence fetcher
@@ -94,6 +98,10 @@
- Cannot insert gaps into sequence when set as reference
- Alignment column in status incorrectly shown as "Sequence position" when mousing over annotation
- Incorrect column numbers in ruler when hidden columns present
+ - Colour by RNA Helices not enabled when user created annotation added to alignment
+ - RNA Structure consensus only computed for '()' base pair annotation
+ - Enabling 'Ignore Gaps' results in zero scores for all base pairs in RNA Structure Consensus
+
Application
@@ -108,7 +116,7 @@
Hide columns not mirrored in complement view in a cDNA/Protein splitframe
Cannot save/restore representative sequence from project when only one sequence is represented
Disabled 'Best Uniprot Coverage' option in Structure Chooser
-
+ Modifying 'Ignore Gaps' on consensus or structure consensus didn't refresh annotation panel
Applet