X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;h=639631391f48e9250b710b7a614fdc8b7df8ad1c;hb=c3c9aabcdf7a7fb00c4c54ab71d145fd0d83b917;hp=ed51a6ad66e47670b4d0864fed983dda768fb103;hpb=a588fe849a5b6d8b965c3120b931771029b94196;p=jalview.git
diff --git a/help/html/releases.html b/help/html/releases.html
index ed51a6a..6396313 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -71,7 +71,7 @@ li:before {
2.10.3
- 10/10/2017
+ 14/11/2017
|
@@ -85,16 +85,86 @@ li:before {
More reliable Ensembl fetching with HTTP
429 rate limit request hander
+
+ Structure views don't get updated unless
+ their colours have changed
+
+ All linked sequences are highlighted for a structure mousover (Jmol) or selection (Chimera)
+ 'Cancel' button in progress bar for JABAWS AACon, RNAAliFold and Disorder prediction jobs
+
+
+ Stop codons are excluded in CDS/Protein view from Ensembl locus cross-references
+ Start/End limits are shown in Pairwise Alignment report
+ Sequence fetcher's Free text 'autosearch' feature can be disabled
+ Retrieve IDs tab added for UniProt and PDB easier retrieval of sequences for lists of IDs
+
+
+ Scripting
+
+ - Groovy interpreter updated to 2.4.12
+ - Example groovy script for generating a matrix of percent identity scores for current alignment.
+ Testing and Deployment
+ - Test to catch memory leaks in Jalview UI
+ |
-
+ General
+ - Pressing tab after updating the colour threshold text field doesn't trigger an update to the alignment view
+ - Race condition when parsing sequence ID strings in parallel
+ - Overview windows are also closed when alignment window is closed
+ - Export of features doesn't always respect group visibility
+
+ Desktop
+
+ - Structures with whitespace chainCode cannot be viewed in Chimera
- Protein annotation panel too high in CDS/Protein view
- Can't edit the query after the server error warning icon is shown in Uniprot and PDB Free Text Search Dialogs
+ - Slow EnsemblGenome ID lookup
+ - Revised Ensembl REST API CDNA query
+ - Hidden column marker in last column not rendered when switching back from Wrapped to normal view
+ - Annotation display corrupted when scrolling right in unwapped alignment view
+ - Existing features on subsequence incorrectly relocated when full sequence retrieved from database
+ - Last reported memory still shown when Desktop->Show Memory is unticked (OSX only)
+ - Amend Features dialog doesn't allow features of same type and group to be selected for amending
+ - Jalview becomes sluggish in wide alignments when hidden columns are present
+ - Jalview freezes when loading and displaying several structures
+ - Black outlines left after resizing or moving a window
+ - Unable to minimise windows within the Jalview desktop on OSX
+ - Mouse wheel doesn't scroll vertically when in wrapped alignment mode
+ - Scale mark not shown when close to right hand end of alignment
+ - Pairwise alignment only aligns selected regions of each selected sequence
+ - Alignment ruler height set incorrectly after canceling the Alignment Window's Font dialog
+ - Show cross-references not enabled after restoring project until a new view is created
+ - Warning popup about use of SEQUENCE_ID in URL links appears when only default EMBL-EBI link is configured (since 2.10.2b2)
+ - Overview redraws whole window when box position is adjusted
+ - Structure viewer doesn't map all chains in a multi-chain structure when viewing alignment involving more than one chain (since 2.10)
+
+ Applet
+
+ - Concurrent modification exception when closing alignment panel
+ BioJSON
+
+ -
+ BioJSON export does not preserve non-positional features
+
+
+ Known Java 9 Issues
+
+ - Groovy Console very slow to open and is
+ not responsive when entering characters (Webstart, Java 9.01,
+ OSX 10.10)
+
+
+ New Known Issues
+
+ |
@@ -1452,6 +1522,10 @@ li:before {
after clicking on it to create new annotation for a
column.
+
+ Null Pointer Exception raised when
+ pressing Add on an orphaned cut'n'paste window.
+