X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;h=6b5f99a56449d5aead644d17dbb85b5893cdb2bb;hb=dd2a555926d76b2fbd627d9eb9f413a752708849;hp=5cdf8a53ecb6473c14b334b1855abec61a97cff0;hpb=67594472bd8920efa45169478981b700b79ae683;p=jalview.git
diff --git a/help/html/releases.html b/help/html/releases.html
index 5cdf8a5..6b5f99a 100755
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@@ -1,261 +1,291 @@
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-
-
- Release |
- New Features |
- Issues Resolved |
-
-
- 2.2.1
- ?/ 2/07 |
-
- - Non standard characters can be read and displayed
-
- Annotations/Features can be imported/exported to the applet via textbox
-
- Applet allows editing of sequence/annotation/group name & description
-
- Preference setting to display sequence name in italics
-
- Annotation file format extended to allow Sequence_groups
- to be defined
-
- Default opening of alignment overview panel can be specified in
- preferences
-
- PDB residue numbering annotation added to associated sequences
-
|
-
- - Applet crash under certain Linux OS with Java 1.6 installed
-
- Annotation file export / import bugs fixed
-
- PNG / EPS image output bugs fixed
|
-
-
- 2.2
- 27/11/06 |
-
- - Multiple views on alignment
-
- Sequence feature editing
-
- "Reload" alignment
-
- "Save" to current filename
-
- Background dependent text colour
-
- Right align sequence ids
-
- User-defined lower case residue colours
-
- Format Menu
-
- Select Menu
-
- Menu item accelerator keys
-
- Control-V pastes to current alignment
-
- Cancel button for DAS Feature Fetching
-
- PCA and PDB Viewers zoom via mouse roller
-
- User-defined sub-tree colours and sub-tree selection
-
- 'New Window' button on the 'Output to Text box'
|
-
- - New memory efficient Undo/Redo System
-
- Optimised symbol lookups and conservation/consensus calculations
-
- Region Conservation/Consensus recalculated after edits
-
- Fixed Remove Empty Columns Bug (empty columns at end of alignment)
-
- Slowed DAS Feature Fetching for increased robustness.
-
- Made angle brackets in ASCII feature descriptions display correctly
-
- Re-instated Zoom function for PCA
-
- Sequence descriptions conserved in web service analysis results
-
- Uniprot ID discoverer uses any word separated by ∣
-
- WsDbFetch query/result association resolved
-
- Tree leaf to sequence mapping improved
-
- Smooth fonts switch moved to FontChooser dialog box.
|
-
-
- 2.1.1
- 12/9/06 |
-
- - Copy consensus sequence to clipboard
- |
-
- - Image output - rightmost residues are rendered if sequence id panel
- has been resized
- - Image output - all offscreen group boundaries are rendered
- - Annotation files with sequence references - all elements in file are
- relative to sequence position
- - Mac Applet users can use Alt key for group editing
- |
-
-
- 2.1
- 22/8/06 |
-
- - MAFFT Multiple Alignment in default Web Service list
- - DAS Feature fetching
- - Hide sequences and columns
- - Export Annotations and Features
- - GFF file reading / writing
- - Associate structures with sequences from local PDB files
- - Add sequences to exisiting alignment
- - Recently opened files / URL lists
- - Applet can launch the full application
- - Applet has transparency for features (Java 1.2 required)
- - Applet has user defined colours parameter
- - Applet can load sequences from parameter "sequencex"
- |
-
- - Redundancy Panel reinstalled in the Applet
- - Monospaced font - EPS / rescaling bug fixed
- - Annotation files with sequence references bug fixed
- |
-
-
- 2.08.1
- 2/5/06 |
-
- - Change case of selected region from Popup menu
- - Choose to match case when searching
- - Middle mouse button and mouse movement can compress / expand the visible
- width and height of the alignment
- |
-
- - Annotation Panel displays complete JNet results
- |
-
-
- 2.08b
- 18/4/06 |
- |
-
- - Java 1.5 bug - InternalMessageDialog fix for threads
- - Righthand label on wrapped alignments shows correct value
- |
-
-
- 2.08
- 10/4/06 |
-
- - Editing can be locked to the selection area
- - Keyboard editing
- - Create sequence features from searches
- - Precalculated annotations can be loaded onto alignments
- - Features file allows grouping of features
- - Annotation Colouring scheme added
- - Smooth fonts off by default - Faster rendering
- - Choose to toggle Autocalculate Consensus On/Off
- |
-
- - Drag & Drop fixed on Linux
- - Jalview Archive file faster to load/save, sequence descriptions saved.
-
- |
-
-
- 2.07
- 12/12/05 |
-
- - PDB Structure Viewer enhanced
- - Sequence Feature retrieval and display enhanced
- - Choose to output sequence start-end after sequence name for file output
- - Sequence Fetcher WSDBFetch@EBI
- - Applet can read feature files, PDB files and can be used for HTML
- form input
- |
-
- - HTML output writes groups and features
- - Group editing is Control and mouse click
- - File IO bugs
- |
-
-
- 2.06
- 28/9/05 |
-
- - View annotations in wrapped mode
- - More options for PCA viewer
- |
-
- - GUI bugs resolved
- - Runs with -nodisplay from command line
- |
-
-
- 2.05b
- 15/9/05 |
-
- - Choose EPS export as lineart or text
- - Jar files are executable
- - Can read in Uracil - maps to unknown residue
- |
-
- - Known OutOfMemory errors give warning message
- - Overview window calculated more efficiently
- - Several GUI bugs resolved
- |
-
-
- 2.05
- 30/8/05 |
-
- - Edit and annotate in "Wrapped" view
- |
-
- - Several GUI bugs resolved
- |
-
-
- 2.04
- 24/8/05 |
-
- - Hold down mouse wheel & scroll to change font size
- |
-
- - Improved JPred client reliability
- - Improved loading of Jalview files
- |
-
-
- 2.03
- 18/8/05 |
-
- - Set Proxy server name and port in preferences
- - Multiple URL links from sequence ids
- - User Defined Colours can have a scheme name and added to Colour Menu
- - Choose to ignore gaps in consensus calculation
- - Unix users can set default web browser
- - Runs without GUI for batch processing
- - Dynamically generated Web Service Menus
- |
-
- - InstallAnywhere download for Sparc Solaris
- |
-
-
- 2.02
- 18/7/05 |
- |
-
- - Copy & Paste order of sequences maintains alignment order.
- |
-
-
- 2.01
- 12/7/05 |
-
- - Use delete key for deleting selection.
- - Use Mouse wheel to scroll sequences.
- - Help file updated to describe how to add alignment annotations.
- - Version and build date written to build properties file.
- - InstallAnywhere installation will check for updates at launch of Jalview.
- |
-
- - Delete gaps bug fixed.
- - FileChooser sorts columns.
- - Can remove groups one by one.
- - Filechooser icons installed.
- - Finder ignores return character when searching. Return key will initiate
- a search.
-
- |
-
-
- 2.0
- 20/6/05 |
- |
- |
-
-
-
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