X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;h=7be088e67dafd502da20b1d196cbf6fce322323b;hb=d7f321634f4e6d5b76fe0df2e312c514551f96dc;hp=a3afd7cd68af36b5479d05644b77e6f76019092d;hpb=b0c51076af91855dabef5191b6ef65e2c9414c65;p=jalview.git

diff --git a/help/html/releases.html b/help/html/releases.html
index a3afd7c..7be088e 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -89,11 +89,27 @@ li:before {
               <!-- JAL-2773 -->Structure views don't get updated unless
               their colours have changed
             </li>
+            <li><!-- JAL-2495 -->All linked sequences are highlighted for a structure mousover (Jmol) or selection (Chimera)</li>
+            <li><!-- JAL-2790 -->'Cancel' button in progress bar for JABAWS AACon, RNAAliFold and Disorder prediction jobs
+            </li>
+            
+            <li><!-- JAL-2617 -->Stop codons are excluded in CDS/Protein view from Ensembl locus cross-references</li>
+            <li><!-- JAL-2685 -->Start/End limits are shown in Pairwise Alignment report</li>
           </ul>
           <ul><li>Example groovy script for generating a matrix of percent identity scores for current alignment.</li></ul>
+          <em>Testing and Deployment</em>
+          <ul><li><!-- JAL-2727 -->Test to catch memory leaks in Jalview UI</li></ul>
+          </div>
       </td>
       <td><div align="left">
-          <em></em>
+          <em>General</em>
+          <ul>
+            <li><!-- JAL-2643 -->Pressing tab after updating the colour threshold text field doesn't trigger an update to the alignment view</li>
+            <li><!-- JAL-2682 -->Race condition when parsing sequence ID strings in parallel</li>
+            <li><!-- JAL-2608 -->Overview windows are also closed when alignment window is closed</li>
+            <li><!-- JAL-2548 -->Export of features doesn't always respect group visibility</li> 
+          </ul>
+          <em>Desktop</em>
           <ul>
             <li><!-- JAL-2777 -->Structures with whitespace chainCode cannot be viewed in Chimera</li>
             <li><!-- JAL-2728 -->Protein annotation panel too high in CDS/Protein view
@@ -101,16 +117,34 @@ li:before {
             <li><!-- JAL-2757 -->Can't edit the query after the server error warning icon is shown in Uniprot and PDB Free Text Search Dialogs
             </li> 
             <li><!-- JAL-2253 -->Slow EnsemblGenome ID lookup</li>
-            <li><!-- JAL-2682 -->Race condition when parsing sequence ID strings in parallel</li>
+            <li><!-- JAL-2529 -->Revised Ensembl REST API CDNA query</li>
             <li><!-- JAL-2739 -->Hidden column marker in last column not rendered when switching back from Wrapped to normal view</li> 
             <li><!-- JAL-2768 -->Annotation display corrupted when scrolling right in unwapped alignment view</li> 
             <li><!-- JAL-2542 -->Existing features on subsequence incorrectly relocated when full sequence retrieved from database</li> 
-            <li><!-- JAL-2608 -->Overview windows are also closed when alignment window is closed</li> 
+            <li><!-- JAL-2733 -->Last reported memory still shown when Desktop->Show Memory is unticked (OSX only)</li>
+            <li><!-- JAL-2658 -->Amend Features dialog doesn't allow features of same type and group to be selected for amending</li>
+            <li><!-- JAL-2524 -->Jalview becomes sluggish in wide alignments when hidden columns are present</li>
+            <li><!-- JAL-2392 -->Jalview freezes when loading and displaying several structures</li>
+            <li><!-- JAL-2732 -->Black outlines left after resizing or moving a window</li>
+            <li><!-- JAL-1900,JAL-1625 -->Unable to minimise windows within the Jalview desktop on OSX</li>
+            <li><!-- JAL-2667 -->Mouse wheel doesn't scroll vertically when in wrapped alignment mode</li>
+            <li><!-- JAL-2636 -->Scale mark not shown when close to right hand end of alignment</li>
+            <li><!-- JAL-2684 -->Pairwise alignment only aligns selected regions of each selected sequence</li>
+            <li><!-- JAL-2973 -->Alignment ruler height set incorrectly after canceling the Alignment Window's Font dialog</li>
+            <li><!-- JAL-2036 -->Show cross-references not enabled after restoring project until a new view is created</li>
+            <li><!-- JAL-2756 -->Warning popup about use of SEQUENCE_ID in URL links appears when only default EMBL-EBI link is configured (since 2.10.2b2)</li>            
            </ul>
           <strong><em>Applet</em></strong><br/>
            <ul>
             <li><!-- JAL-2687 -->Concurrent modification exception when closing alignment panel</li> 
           </ul>
+          <strong><em>BioJSON</em></strong><br/>
+          <ul>
+          <li>
+            <!-- JAL-2546 -->BioJSON export does not preserve non-positional features
+          </li>
+          </ul>
+          </div>
       </td>
     </tr>
     <tr>
@@ -1468,6 +1502,10 @@ li:before {
               after clicking on it to create new annotation for a
               column.
             </li>
+            <li>
+              <!-- JAL-1980 -->Null Pointer Exception raised when 
+              pressing Add on an orphaned cut'n'paste window.
+            </li>
             <!--  may exclude, this is an external service stability issue  JAL-1941 
             -- > RNA 3D structure not added via DSSR service</li> -->
           </ul>