X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;h=9339b33d5644db3785b74ec41187bc1f4bbb51c7;hb=0d50ab3cdf86523b239e7dcccc551164ed197467;hp=cf4bfedb857d44a3fff31c9159f70947b8706ab7;hpb=5079464ec6cdd401e4c114b09b21af31ab793587;p=jalview.git
diff --git a/help/html/releases.html b/help/html/releases.html
index cf4bfed..9339b33 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -52,19 +52,21 @@
General
- - Jmol now primary parser for importing structure data to Jalview. Enables mmCIF and better PDB parsing.
+ - Jmol now primary parser for importing structure data to Jalview. Enables mmCIF and better PDB parsing.
- Alignment ruler shows positions relative to reference sequence
- Position/residue shown in status bar when mousing over sequence associated annotation
- Default RNA SS symbol to 'matching bracket' for manual entry
- RNA Structure consensus indicates wc-only '()', canonical '[]' and invalid '{}' base pair populations for each column
- Feature settings popup menu options for showing or hiding columns containing a feature
- Edit selected group by double clicking on group and sequence associated annotation labels
+ - Sequence name added to annotation label in select/hide columns by annotation and colour by annotation dialogs
Application
+ - UniProt - PDB protein structure mappings with the EMBL-EBI PDBe SIFTS database
- Updated download sites used for Rfam and Pfam sources to xfam.org
- Disabled Rfam(Full) in the sequence fetcher
- Show residue labels in Chimera when mousing over sequences in Jalview
@@ -75,10 +77,11 @@
- Allow groovy scripts that call Jalview.getAlignFrames() to run in headless mode
- Support for creating new alignment calculation workers from groovy scripts
- Store/restore reference sequence in Jalview projects
- - Chain codes for a sequence's PDB associations are now saved/restored from project
- - Double click on an entry in Jalview's database chooser opens a sequence fetcher
- - Free-text search client for UniProt using the UniProt REST API
-
+ - Chain codes for a sequence's PDB associations are now saved/restored from project
+ - Double click on an entry in Jalview's database chooser opens a sequence fetcher
+ - Free-text search client for UniProt using the UniProt REST API
+ - -nonews command line parameter to prevent the news reader opening
+
Applet
@@ -103,7 +106,8 @@
- RNA Structure consensus only computed for '()' base pair annotation
- Enabling 'Ignore Gaps' results in zero scores for all base pairs in RNA Structure Consensus
- Extend selection with columns containing feature not working
-
+ - Pfam format writer puts extra space at beginning of sequence
+ - Incomplete sequence extracted from pdb entry 3a6s
Application
@@ -118,12 +122,13 @@
Hide columns not mirrored in complement view in a cDNA/Protein splitframe
Cannot save/restore representative sequence from project when only one sequence is represented
Disabled 'Best Uniprot Coverage' option in Structure Chooser
- Modifying 'Ignore Gaps' on consensus or structure consensus didn't refresh annotation panel
+ Modifying 'Ignore Gaps' on consensus or structure consensus didn't refresh annotation panel
+ View mapping in structure view shows mappings between sequence and all chains in a PDB file
Applet
-
+ - Incorrect columns are selected when hidden columns present before start of sequence
|