X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;h=97d6789b4b2cb756b292915b5f0f2c59daa41974;hb=bf3206cc56a3bff812f96967a81cc9cff54a57b1;hp=009b2bfeac91688434e7cb0b369d8710a5363b7d;hpb=b5b3c8c4a7498b578870e3f0b9b6844fd59909ef;p=jalview.git
diff --git a/help/html/releases.html b/help/html/releases.html
index 009b2bf..97d6789 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -71,7 +71,7 @@ li:before {
2.10.2
- 30/5/2017
+ 20/6/2017
|
@@ -81,6 +81,7 @@ li:before {
Custom shading schemes created via groovy scripts
linked scrolling of CDS/Protein views via Overview or sequence motif search operations
Efficiency improvements for interacting with alignment and overview windows
+ Hidden columns and sequences can be omitted in Overview
Posterior probability annotation from
Stockholm files imported as sequence associated annotation
@@ -90,6 +91,7 @@ li:before {
extension when importing structure files without embedded
names or PDB accessions
+ Amend sequence features dialog box can be opened by double clicking gaps within sequence feature extent
Application
@@ -116,7 +118,7 @@ li:before {
Test Suite
- Added PrivelegedAccessor to test suite
+ Added PrivilegedAccessor to test suite
Prevent or clear modal dialogs raised during tests
@@ -126,7 +128,7 @@ li:before {
Fixed incorrect value in BLOSUM 62 score
matrix - C->R should be '3' Old matrix restored with
- this one-line groovy script: jalview.schemes.ResidueProperties.BLOSUM62[4][1]=3
+ this one-line groovy script: jalview.analysis.scoremodels.ScoreModels.instance.BLOSUM62.@matrix[4][1]=3
Fixed Jalview's treatment of gaps in PCA
@@ -159,7 +161,9 @@ li:before {
Colour threshold slider doesn't update to reflect currently selected view or group's shading thresholds
Percentage identity and conservation menu items do not show a tick or allow shading to be disabled
Conservation shading or PID threshold lost when base colourscheme changed if slider not visible
- Sequence features shown in tooltip for gaps before start of features
+ Sequence features shown in tooltip for gaps before start of features
+ Very large alignments take a long time to load
+ Cannot load Newick trees from eggnog ortholog database
Application
@@ -175,6 +179,14 @@ li:before {
- DAS registry not found exceptions removed from console output
- Above PID colour threshold not recovered when alignment view imported from project
- No mappings generated between structure and sequences extracted from structure files imported via URL
+ -
+ Structures loaded via URL are saved in
+ Jalview Projects rather than fetched via URL again when
+ the project is loaded and the structure viewed
+
+ - Trackpad horizontal scroll gesture adjusts start position in wrap mode
+ - Status bar doesn't show positions for ambiguous amino acids
+ - Hide insertions in PopUp menu excludes gaps in selection, current sequence and only within selected columns
Applet
@@ -185,7 +197,6 @@ li:before {
New Known Issues
- Protein/CDS view scrolling not always in phase after a sequence motif find operation
- - Status bar doesn't show positions for ambiguous amino acids
- Importing annotation file with rows containing just upper and lower case letters are interpreted as WUSS rna secondary structure symbols
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