X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;h=abbc891a49985fb59ba26522cf90a1c449e90172;hb=855b35ae3bdf9846900555b5ef284af053b85eb1;hp=c566aae2e099be8a95dcf21388354df8a60a92bd;hpb=b18564cbc54fd371132693fdc2a94b962c711655;p=jalview.git

diff --git a/help/html/releases.html b/help/html/releases.html
index c566aae..abbc891 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -67,44 +67,182 @@ li:before {
         </div>
       </td>
     </tr>
-    <tr>
-    <td width="60" nowrap>
-      <div align="center">
-        <strong><a name="Jalview.2.10.5">2.10.5</a><br /> <em>4/09/2018</em></strong>
-      </div>
-    </td>
+    
+      <td width="60" nowrap>
+        <div align="center">
+          <strong><a name="Jalview.2.11.0">2.11.0</a><br />
+            <em>29/01/2019</em></strong>
+        </div>
+      </td>
     <td><div align="left">
-        <em></em>
+        <em>Deprecations</em>
         <ul>
+          <li>
+            <!-- JAL-3035 -->DAS sequence retrieval and annotation
+            capabilities removed from the Jalview Desktop
+          </li>
+        </ul>
+        <em>Release Processes</em>
+        <ul>
+        <li>Atlassian Bamboo continuous integration server for unattended Test Suite execution</li>
+        <li><!-- JAL-2864 -->Memory test suite to detect leaks in common operations</li> 
         </ul>
       </div></td>
     <td><div align="left">
         <em></em>
         <ul>
           <li>
-            <!-- JAL-247 -->Hidden sequence markers and representative
-            sequence bolding included when exporting alignment as EPS,
-            SVG, PNG or HTML. <em>Display of these can be
-              configured via the Format menu or in batch mode with a
-              jalview properties file.</em>
+            <!-- JAL-2865 -->Jalview hangs when closing windows
+            or the overview updates with large alignments.
+          </li>
+          <li>
+            <!-- JAL-2865 -->Tree and PCA calculation fails for selected
+            region if columns were selected by dragging right-to-left
+            and the mouse moved to the left of the first column.
+          </li>
+        </ul>
+        <em>Editing</em>
+        <ul>
+          <li>
+            <!-- JAL-2822 -->Start and End should be updated when
+            sequence data at beginning or end of alignment added/removed
+            via 'Edit' sequence
           </li>
           <li>
-            <!-- JAL-3003 -->Alignment is black in exported EPS file
-            when sequences are selected in exported view.</em>
+            <!-- JAL-2541 -->Delete/Cut selection doesn't relocate
+            sequence features correctly when start of sequence is
+            removed (Known defect since 2.10)
           </li>
           <li>
-            <!-- JAL-3059 -->Groups with different coloured borders
-            aren't rendered with correct colour.
+            <!-- JAL-2846, -->Avoided use of apostrophe in dialog box
           </li>
           <li>
-            <!-- JAL-3092 -->Jalview could hang when importing certain types of knotted RNA secondary structure
+            <!-- JAL- -->
           </li>
+        </ul>
+        <em>New Known Defects</em>
+        <ul>
           <li>
-            <!-- JAL-3095 -->Sequence highlight in trimmed VARNA 2D structure is incorrect for sequences that do not start at 1
+            <!-- JAL-3178 -->Nonpositional features lose feature group
+            on export as jalview features file
           </li>
         </ul>
+      </div></td>
+    </tr>
+    <tr>
+    <td width="60" nowrap>
+      <div align="center">
+        <strong><a name="Jalview.2.10.5">2.10.5</a><br /> <em>10/09/2018</em></strong>
       </div>
     </td>
+    <td><div align="left">
+        <em></em>
+        <ul>
+            <li>
+              <!-- JAL-3101 -->Default memory for Jalview webstart and
+              InstallAnywhere increased to 1G.
+            </li>
+            <li>
+              <!-- JAL-247 -->Hidden sequence markers and representative
+              sequence bolding included when exporting alignment as EPS,
+              SVG, PNG or HTML. <em>Display is configured via the
+                Format menu, or for command-line use via a jalview
+                properties file.</em>
+            </li>
+            <li>
+              <!-- JAL-3076 -->Ensembl client updated to Version 7 REST
+              API and sequence data now imported as JSON.
+            </li>
+            <li>
+              <!-- JAL-3065 -->Change in recommended way of starting
+              Jalview via a Java command line: add jars in lib directory
+              to CLASSPATH, rather than via the deprecated java.ext.dirs
+              property.
+            </li>
+          </ul>
+          <em>Development</em>
+          <ul>
+            <li>
+              <!-- JAL-3047 -->Support added to execute test suite
+              instrumented with <a href="http://openclover.org/">Open
+                Clover</a>
+            </li>
+          </ul>
+        </div></td>
+    <td><div align="left">
+        <em></em>
+        <ul>
+            <li>
+              <!-- JAL-3104 -->Poorly scaled bar in quality annotation
+              row shown in Feredoxin Structure alignment view of example
+              alignment.
+            </li>
+            <li>
+              <!-- JAL-2854 -->Annotation obscures sequences if lots of
+              annotation displayed.
+            </li>
+            <li>
+              <!-- JAL-3107 -->Group conservation/consensus not shown
+              for newly created group when 'Apply to all groups'
+              selected
+            </li>
+            <li>
+              <!-- JAL-3087 -->Corrupted display when switching to
+              wrapped mode when sequence panel's vertical scrollbar is
+              visible.
+            </li>
+            <li>
+              <!-- JAL-3003 -->Alignment is black in exported EPS file
+              when sequences are selected in exported view.</em>
+            </li>
+            <li>
+              <!-- JAL-3059 -->Groups with different coloured borders
+              aren't rendered with correct colour.
+            </li>
+            <li>
+              <!-- JAL-3092 -->Jalview could hang when importing certain
+              types of knotted RNA secondary structure.
+            </li>
+            <li>
+              <!-- JAL-3095 -->Sequence highlight and selection in
+              trimmed VARNA 2D structure is incorrect for sequences that
+              do not start at 1.
+            </li>
+            <li>
+              <!-- JAL-3061 -->'.' inserted into RNA secondary structure
+              annotation when columns are inserted into an alignment,
+              and when exporting as Stockholm flatfile.
+            </li>
+            <li>
+              <!-- JAL-3053 -->Jalview annotation rows containing upper
+              and lower-case 'E' and 'H' do not automatically get
+              treated as RNA secondary structure.
+            </li>
+            <li>
+              <!-- JAL-3106 -->.jvp should be used as default extension
+              (not .jar) when saving a jalview project file.
+            </li>
+            <li>
+              <!-- JAL-3105 -->Mac Users: closing a window correctly
+              transfers focus to previous window on OSX
+            </li>
+          </ul>
+          <em>Java 10 Issues Resolved</em>
+          <ul>
+            <li>
+              <!-- JAL-2988 -->OSX - Can't save new files via the File
+              or export menus by typing in a name into the Save dialog
+              box.
+            </li>
+            <li>
+              <!-- JAL-2988 JAL-2968 -->Jalview now uses patched version
+              of the <a href="https://violetlib.org/vaqua/overview.html">VAqua5</a>
+              'look and feel' which has improved compatibility with the
+              latest version of OSX.
+            </li>
+          </ul>
+        </div>
+    </td>
     </tr>
     <tr>
       <td width="60" nowrap>