X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;h=b3d98c9a6207318618fedd292c85a0283d341cfa;hb=235ee12229b39c41085229f5375ff6dc8c93b19d;hp=cb2b27845d8bd79675c0306e921ba2b8fba01ca5;hpb=abae9d3803456a81f96bc025360d6e25d298cd91;p=jalview.git
diff --git a/help/html/releases.html b/help/html/releases.html
index cb2b278..b3d98c9 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -71,7 +71,7 @@ li:before {
2.10.3
- 10/10/2017
+ 14/11/2017
|
@@ -89,11 +89,31 @@ li:before {
Structure views don't get updated unless
their colours have changed
+ All linked sequences are highlighted for a structure mousover (Jmol) or selection (Chimera)
+ 'Cancel' button in progress bar for JABAWS AACon, RNAAliFold and Disorder prediction jobs
+
+
+ Stop codons are excluded in CDS/Protein view from Ensembl locus cross-references
+ Start/End limits are shown in Pairwise Alignment report
- - Example groovy script for generating a matrix of percent identity scores for current alignment.
+ Scripting
+
+ - Groovy interpreter updated to 2.4.12
+ - Example groovy script for generating a matrix of percent identity scores for current alignment.
+
+ Testing and Deployment
+ - Test to catch memory leaks in Jalview UI
+
|
-
+ General
+
+ - Pressing tab after updating the colour threshold text field doesn't trigger an update to the alignment view
+ - Race condition when parsing sequence ID strings in parallel
+ - Overview windows are also closed when alignment window is closed
+ - Export of features doesn't always respect group visibility
+
+ Desktop
- Structures with whitespace chainCode cannot be viewed in Chimera
- Protein annotation panel too high in CDS/Protein view
@@ -101,10 +121,43 @@ li:before {
- Can't edit the query after the server error warning icon is shown in Uniprot and PDB Free Text Search Dialogs
- Slow EnsemblGenome ID lookup
- - Race condition when parsing sequence ID strings in parallel
+ - Revised Ensembl REST API CDNA query
- Hidden column marker in last column not rendered when switching back from Wrapped to normal view
- Annotation display corrupted when scrolling right in unwapped alignment view
+ - Existing features on subsequence incorrectly relocated when full sequence retrieved from database
+ - Last reported memory still shown when Desktop->Show Memory is unticked (OSX only)
+ - Amend Features dialog doesn't allow features of same type and group to be selected for amending
+ - Jalview becomes sluggish in wide alignments when hidden columns are present
+ - Jalview freezes when loading and displaying several structures
+ - Black outlines left after resizing or moving a window
+ - Unable to minimise windows within the Jalview desktop on OSX
+ - Mouse wheel doesn't scroll vertically when in wrapped alignment mode
+ - Scale mark not shown when close to right hand end of alignment
+ - Pairwise alignment only aligns selected regions of each selected sequence
+ - Alignment ruler height set incorrectly after canceling the Alignment Window's Font dialog
+ - Show cross-references not enabled after restoring project until a new view is created
+ - Warning popup about use of SEQUENCE_ID in URL links appears when only default EMBL-EBI link is configured (since 2.10.2b2)
+ - Overview redraws whole window when box position is adjusted
+ - Structure viewer doesn't map all chains in a multi-chain structure when viewing alignment involving more than one chain (since 2.10)
+
+ Applet
+
+ - Concurrent modification exception when closing alignment panel
+ BioJSON
+
+ -
+ BioJSON export does not preserve non-positional features
+
+
+ Known Java 9 Issues
+
+ - Groovy Console very slow to open and is
+ not responsive when entering characters (Webstart, Java 9.01,
+ OSX 10.10)
+
+
+
|
@@ -1462,6 +1515,10 @@ li:before {
after clicking on it to create new annotation for a
column.
+
+ Null Pointer Exception raised when
+ pressing Add on an orphaned cut'n'paste window.
+