@@ -112,8 +889,8 @@
General
-
- Updated Spanish translations.
-
+ Updated Spanish translations.
+
-
Jmol now primary parser
for importing structure data to Jalview. Enables mmCIF and
@@ -402,6 +1179,10 @@
Quality and Conservation are now shown on
load even when Consensus calculation is disabled
+ -
+ Remove right on penultimate column of
+ alignment does nothing
+
Application
@@ -487,7 +1268,8 @@
-
Enable 'Get Cross-References' in menu
- after fetching cross-references, and restoring from project
+ after fetching cross-references, and restoring from
+ project
-
Mouseover of a copy of a sequence is not
@@ -548,6 +1330,15 @@
Incorrect start and end reported for PDB
to sequence mapping in 'View Mappings' report
+ -
+ Unable to read old Jalview projects that
+ contain non-XML data added after Jalvew wrote project.
+
+ -
+ Newly created annotation row reorders
+ after clicking on it to create new annotation for a
+ column.
+
@@ -616,6 +1407,12 @@
Applet
- Split frame example added to applet examples page
+ Build and Deployment
+
+ -
+ New ant target for running Jalview's test
+ suite
+
|
@@ -1003,10 +1800,10 @@
Deployment and Documentation
+ General
+ --> Deployment and Documentation
- 2G and 1G options in launchApp have no effect on
memory allocation
@@ -1214,8 +2011,7 @@
Certum to the Jalview
open source project).
- - Jalview SRS links replaced by UniProt and EBI-search
-
+ - Jalview SRS links replaced by UniProt and EBI-search
- Output in Stockholm format
- Allow import of data from gzipped files
- Export/import group and sequence associated line
@@ -1844,11 +2640,6 @@
- URL links generated from description line for
regular-expression based URL links (applet and application)
-
-
-
-
-
- Non-positional feature URL links are shown in link
menu
@@ -1876,8 +2667,8 @@
- Enable or disable non-positional feature and database
references in sequence ID tooltip from View menu in
application.
-
+
- Group-associated consensus, sequence logos and
conservation plots
- Symbol distributions for each column can be exported
@@ -2301,11 +3092,6 @@
- Cancel button for DAS Feature Fetching
- PCA and PDB Viewers zoom via mouse roller
- User-defined sub-tree colours and sub-tree selection
-
-
-
-
-
- 'New Window' button on the 'Output to Text box'
@@ -2320,11 +3106,6 @@
- Fixed Remove Empty Columns Bug (empty columns at end
of alignment)
- Slowed DAS Feature Fetching for increased robustness.
-
-
-
-
-
- Made angle brackets in ASCII feature descriptions
display correctly
@@ -2336,11 +3117,6 @@
- WsDbFetch query/result association resolved
- Tree leaf to sequence mapping improved
- Smooth fonts switch moved to FontChooser dialog box.
-
-
-
-
-
|