X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;h=c4a8bab9d1fd1e9905f225b33c0955a4f23120ca;hb=d0771875f23ab994c4f85fb6cd604378768df10e;hp=ea956968522a950f7889e12b72a8ef66e5610da3;hpb=12fdd79d25527a93ee20ffa562899ec5b703e4d5;p=jalview.git diff --git a/help/html/releases.html b/help/html/releases.html index ea95696..c4a8bab 100755 --- a/help/html/releases.html +++ b/help/html/releases.html @@ -1,728 +1,2170 @@ + Release History -

Release History

- - - - - - - +

+ Release History +

+
-
Release
- 		-
New Features
- 		-
Issues Resolved
-
+ + + + + + + + + + + + + + + + + + + - - + + Application + + Applet + + + + + + + - - - - - - - - - - - - - - +
  • Make groups for selection uses marked columns as well + as the active selected region
    • - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    +
    + Release +
    +     		+
    + New Features +
    +     		+
    + Issues Resolved +
    +
    +
    + 2.10.0
    13/9/2016     +
    +     		General +
      +
      • +
    • Alignment ruler shows positions relative to reference sequence
      • +
    Application +
      +
      • +
      • +
      • +
      • +
      • +
      • +
    • Show residue labels in Chimera when mousing over sequences in Jalview
      • +
    • Support for reverse-complement coding regions in ENA and EMBL
      • +
    • Upgrade to EMBL XML 1.2 for ENA record retrieval
      • +
    • New 'execute Groovy script' option in an alignment window's Calculate menu
      • +
    • Allow groovy scripts that call Jalview.getAlignFrames() to run in headless mode
      • +
    • Store/restore reference sequence in Jalview projects
      • + +
    Applet +
      +
      • +
    		+
    + General +
      +
    • reinstate CTRL-click for opening pop-up menu on OSX
      • +
    • Export features in Jalview format (again) includes graduated colourschemes
      • +
    • More responsive when working with big alignments and lots of hidden columns
      • +
    • hidden column markers not always rendered at right of alignment window
      • +
    • Tidied up links in help file table of contents
      • +
    • Feature based tree calculation not shown for DNA alignments
      • +
    • Hidden columns ignored during feature based tree calculation
      • +
    • Alignment view stops updating when show unconserved enabled for group on alignment
      • +
    • Cannot insert gaps into sequence when set as reference
      • + +
    + Application +
      +
      • +
    • Corrupt preferences for SVG, EPS & HTML output when running on non-gb/us i18n platforms
      • +
    • URLs and links can imported by drag'n'drop on OSX webstart
      • +
    • InstallAnywhere distribution fails when launching Chimera
      • +
    • Jalview very slow to launch via webstart (also hotfix for 2.9.0b2)
      • +
    • Cannot save project when view has a reference sequence defined
      • +
    • Columns are suddenly selected in other alignments and views when revealing hidden columns
      • +
    • Hide columns not mirrored in complement view in a cDNA/Protein splitframe
      • +
    • Cannot save/restore representative sequence from project when only one sequence is represented
      • + +
    + Applet +
      +
      • +
    +
    +
    +
    + 2.9.0b2
    + 16/10/2015     +
    +     		General +
      +
    • Time stamps for signed Jalview application and applet + jars
      • +
    		+
    + Application +
      +
    • Duplicate group consensus and conservation rows + shown when tree is partitioned
      • +
    • Erratic behaviour when tree partitions made with + multiple cDNA/Protein split views
      • +
    +
    +
    +
    + 2.9.0b1
    + 8/10/2015     +
    +     		General +
      +
    • Updated Spanish translations of localized text for + 2.9
      • +
    Application +
      + +
    • Signed OSX InstallAnywhere installer
      • +
    • Support for per-sequence based annotations in BioJSON
      • +
    Applet +
      +
    • Split frame example added to applet examples page
      • +
    		+
    + General +
      +
    • Mapping of cDNA to protein in split frames + incorrect when sequence start > 1
      • +
    • Broken images in filter column by annotation dialog + documentation
      • +
    • Feature colours not parsed from features file
      • +
    • Exceptions and incomplete link URLs recovered when + loading a features file containing HTML tags in feature + description
      • -
    		-
    2.5
    - Not Yet Released
    -     		-
      -
    • Fetch DB References capabilities and UI expanded to support - retrieval from DAS sequence sources
      • -
    • Local DAS Sequence sources can be added via the command line - or via the Add local source dialog box.
      • -
    • Enable or disable non-positional feature and database - references in sequence ID tooltip from View menu in application.
      • -
    • Parsing of Dbref and DbxRef feature types as database - references
      • -
    • URL links generated from description line for - regular-expression based URL links (applet and application) -
    • Non-positional feature URL links are shown in link menu
      • -
    • Linked viewing of nucleic acid sequences and structures
      • -
    • Automatic Scrolling option in View menu to display the - currently highlighted region of an alignment.
      • -
    • Optionally scale multi-character column labels to fit within each column
      • - -
    - Vamsas Capabilities -
      -
    • -
    • Improved VAMSAS synchronization (jalview archive used to - preserve views, structures, and tree display settings)
      • -
    • Import of vamsas documents from disk or URL via command line
      • -
    • Sharing of selected regions between views and with other - VAMSAS applications (Experimental feature!)
      • -
    • Updated API to VAMSAS version 0.2
      • -
    - Application -
      -
    • New hidden columns and rows and representatives capabilities - in annotations file (in progress - not yet fully implemented)
      • -
    • Order an alignment in order of average feature score or - total feature count
      • -
    • Shading features by score or associated description
      • -
    • Group-associated automatic and user-defined alignment - annotation
      • -
    • Symbol distributions for each column can be exported and - visualized as sequence logos
      • -
    • Optional automatic sort of associated alignment view when a - new tree is opened.
      • -
    • Jalview Java Console
      • -
    • New preference items for sequence ID tooltip and consensus annotation
      • -
    - Applet -
      -
    • Middle button resizes annotation row height
      • -
    • parameter to enable automatic sort of associated alignment view when a - new tree is opened.
      • -
    • Non-positional features displayed in sequence ID tooltip
      • -
    - Other -
      -
    • Features format: graduated colour definitions and - specification of feature scores
      • -
    • XML formats extended to support graduated feature colourschemes, group associated annotation, and profile visualization settings.
      • -
    		-
      -
    • Source field in GFF files parsed as feature source rather - than description
      • -
    • URL links generated for all feature links (bugfix)
      • -
    • Added URL embedding instructions to features file - documentation.
      • -
    • Codons containing ambiguous nucleotides translated as 'X' in - peptide product
      • -
    • Match case switch in find dialog box works for both sequence - ID and sequence string and query strings do not have to be in upper - case to match case-insensitively.
      • -
    • AMSA files only contain first column of multi-character column annotation labels
      • -
    • PDB files without embedded PDB IDs given a friendly name
      • -
    • Applet: -
        -
      • -
      -
      • -
    • Application: -
        -
      • Better handling of exceptions during sequence retrieval
        • -
      • Dasobert generated non-positional feature URL link text - excludes the start_end suffix (application)
        • -
      • PDB files retrieved from URLs are cached properly
        • -
      • Sequence description lines properly shared via VAMSAS
        • -
      • Sequence fetcher fetches multiple records for all data - sources
        • -
      • Ensured that command line das feature retrieval completes - before alignment figures are generated.
        • -
      -
      • -
    -
    + 2.9
    10/9/2015     +
    		General +
      +
    • Linked visualisation and analysis of DNA and Protein + alignments: +
        +
      • Translated cDNA alignments shown as split protein + and DNA alignment views
        • +
      • Codon consensus annotation for linked protein and + cDNA alignment views
        • +
      • Link cDNA or Protein product sequences by loading + them onto Protein or cDNA alignments
        • +
      • Reconstruct linked cDNA alignment from aligned + protein sequences
        • +
      +
      • +
    • Jmol integration updated to Jmol v14.2.14
      • +
    • Import and export of Jalview alignment views as BioJSON
      • +
    • New alignment annotation file statements for + reference sequences and marking hidden columns
      • +
    • Reference sequence based alignment shading to + highlight variation
      • +
    • Select or hide columns according to alignment + annotation
      • +
    • Find option for locating sequences by description
      • +
    • Conserved physicochemical properties shown in amino + acid conservation row
      • +
    • Alignments can be sorted by number of RNA helices
      • +
    Application +
      +
    • New cDNA/Protein analysis capabilities +
        +
      • Get Cross-References should open a Split Frame + view with cDNA/Protein
        • +
      • Detect when nucleotide sequences and protein + sequences are placed in the same alignment
        • +
      • Split cDNA/Protein views are saved in Jalview + projects
        • +
      +
      • -
    -
    2.4.0.b2
    - 28/10/2009
    -     		-
      -
    • Experimental support for google analytics usage tracking.
      • -
    • Jalview privacy settings (user preferences and docs).
      • -
    -     		-
      -
    • Race condition in applet preventing startup in jre1.6.0u12+.
      • -
    • Exception when feature created from selection beyond length - of sequence.
      • -
    • Allow synthetic PDB files to be imported gracefully
      • -
    • Sequence associated annotation rows associate with all - sequences with a given id
      • -
    • Find function matches case-insensitively for sequence ID - string searches
      • -
    • Non-standard characters do not cause pairwise alignment to - fail with exception
      • -
    - Application Issues -
      -
    • Sequences are now validated against EMBL database
      • -
    • Sequence fetcher fetches multiple records for all data - sources
      • -
    - InstallAnywhere Issues -
      -
    • Dock icon works for Mac OS X java (Mac 1.6 update issue with - installAnywhere mechanism)
      • -
    • Command line launching of JARs from InstallAnywhere version - (java class versioning error fixed)
      • -
    -
    +
  • Use REST API to talk to Chimera
    • +
  • Selected regions in Chimera are highlighted in linked + Jalview windows
    • -
    2.4
    - 27/8/2008
    -     		User Interface -
      -
    • Linked highlighting of codon and amino acid from translation - and protein products
      • -
    • Linked highlighting of structure associated with residue - mapping to codon position
      • -
    • Sequence Fetcher provides example accession numbers and - 'clear' button
      • -
    • MemoryMonitor added as an option under Desktop's Tools menu
      • -
    • Extract score function to parse whitespace separated numeric - data in description line
      • -
    • Column labels in alignment annotation can be centred.
      • -
    • Tooltip for sequence associated annotation give name of - sequence
      • -
    - Web Services and URL fetching -
      -
    • JPred3 web service
      • -
    • Prototype sequence search client (no public services - available yet)
      • -
    • Fetch either seed alignment or full alignment from PFAM
      • -
    • URL Links created for matching database cross references as - well as sequence ID
      • -
    • URL Links can be created using regular-expressions
      • -
    - Sequence Database Connectivity -
      -
    • Retrieval of cross-referenced sequences from other databases -
      • -
    • Generalised database reference retrieval and validation to - all fetchable databases
      • -
    • Fetch sequences from DAS sources supporting the sequence - command
      • -
    - Import and Export -
  • export annotation rows as CSV for spreadsheet import
    • -
  • Jalview projects record alignment dataset associations, EMBL - products, and cDNA sequence mappings
    • -
  • Sequence Group colour can be specified in Annotation File
    • -
  • Ad-hoc colouring of group in Annotation File using RGB - triplet as name of colourscheme
    • - - VAMSAS Client capabilities (Experimental) -
      -
    • treenode binding for VAMSAS tree exchange
      • -
    • local editing and update of sequences in VAMSAS alignments - (experimental)
      • -
    • Create new or select existing session to join
      • -
    • load and save of vamsas documents
      • -
    - Application command line -
      -
    • -tree parameter to open trees (introduced for passing from - applet)
      • -
    • -fetchfrom command line argument to specify nicknames of DAS - servers to query for alignment features
      • -
    • -dasserver command line argument to add new servers that are - also automatically queried for features
      • -
    • -groovy command line argument executes a given groovy script - after all input data has been loaded and parsed
      • -
    - Applet-Application data exchange -
      -
    • Trees passed as applet parameters can be passed to - application (when using "View in full application")
      • -
    - Applet Parameters -
      -
    • feature group display control parameter
      • -
    • debug parameter
      • -
    • showbutton parameter
      • -
    - Applet API methods -
      -
    • newView public method
      • -
    • Window (current view) specific get/set public methods
      • -
    • Feature display control methods
      • -
    • get list of currently selected sequences
      • -
    - New Jalview distribution features -
      -
    • InstallAnywhere Installer upgraded to IA 2008 VP1
      • -
    • RELEASE file gives build properties for the latest Jalview - release.
      • -
    • Java 1.1 Applet build made easier and donotobfuscate - property controls execution of obfuscator
      • -
    • Build target for generating source distribution
      • -
    • Debug flag for javacc
      • -
    • .jalview_properties file is documented (slightly) in - jalview.bin.Cache
      • -
    • Continuous Build Integration for stable and development - version of Application, Applet and source distribution
      • -
    +
  • VARNA RNA viewer updated to v3.93
    • +
  • VARNA views are saved in Jalview Projects
    • +
  • Pseudoknots displayed as Jalview RNA annotation can + be shown in VARNA
    • -     		-
      -
    • selected region output includes visible annotations (for - certain formats)
      • -
    • edit label/displaychar contains existing label/char for - editing
      • -
    • update PDBEntries when DBRefEntries change (vamsas)
      • -
    • shorter peptide product names from EMBL records
      • -
    • Newick string generator makes compact representations
      • -
    • bootstrap values parsed correctly for tree files with - comments
      • -
    • pathological filechooser bug avoided by not allowing - filenames containing a ':'
      • -
    • Fixed exception when parsing GFF files containing global - sequence features
      • -
    • Alignment datasets are finalized only when number of - references from alignment sequences goes to zero
      • -
    • Close of tree branch colour box without colour selection - causes cascading exceptions
      • -
    • occasional negative imgwidth exceptions
      • -
    • better reporting of non-fatal warnings to user when file - parsing fails.
      • -
    • Save works when Jalview project is default format
      • -
    • Save as dialog opened if current alignment format is not a - valid output format
      • -
    • Uniprot canonical names introduced for both das and vamsas
      • -
    • Histidine should be midblue (not pink!) in Zappo
      • -
    • error messages passed up and output when data read fails
      • -
    • edit undo recovers previous dataset sequence when sequence - is edited
      • -
    • allow PDB files without pdb ID HEADER lines (like those - generated by MODELLER) to be read in properly
      • -
    • allow reading of JPred concise files as a normal filetype
      • -
    • Stockholm annotation parsing and alignment properties import - fixed for PFAM records
      • -
    • Structure view windows have correct name in Desktop window - list
      • -
    • annotation consisting of sequence associated scores can be - read and written correctly to annotation file
      • -
    • Aligned cDNA translation to aligned peptide works correctly -
      • -
    • Fixed display of hidden sequence markers and non-italic font - for representatives in Applet
      • -
    • Applet Menus are always embedded in applet window on Macs.
      • -
    • Newly shown features appear at top of stack (in Applet)
      • -
    • Annotations added via parameter not drawn properly due to - null pointer exceptions
      • -
    • Secondary structure lines are drawn starting from first - column of alignment
      • -
    • Uniprot XML import updated for new schema release in July - 2008
      • -
    • Sequence feature to sequence ID match for Features file is - case-insensitive
      • -
    • Sequence features read from Features file appended to all - sequences with matching IDs
      • -
    • PDB structure coloured correctly for associated views - containing a sub-sequence
      • -
    • PDB files can be retrieved by applet from Jar files
      • -
    • feature and annotation file applet parameters referring to - different directories are retrieved correctly
      • - -
    • Fixed application hang whilst waiting for splash-screen - version check to complete
      • -
    • Applet properly URLencodes input parameter values when - passing them to the launchApp service
      • -
    • display name and local features preserved in results - retrieved from web service
      • -
    • Visual delay indication for sequence retrieval and sequence - fetcher initialisation
      • -
    • updated Application to use DAS 1.53e version of dasobert DAS - client
      • -
    • Re-instated Full AMSA support and .amsa file association
      • -
    • Fixed parsing of JNet Concise annotation sans - sequences
      • -
    -
    -
    2.3
    - 9/5/07
    -     		-
      -
    • Jmol 11.0.2 integration
      • -
    • PDB views stored in Jalview XML files
      • -
    • Slide sequences
      • -
    • Edit sequence in place
      • -
    • EMBL CDS features
      • -
    • DAS Feature mapping
      • -
    • Feature ordering
      • -
    • Alignment Properties
      • -
    • Annotation Scores
      • -
    • Sort by scores
      • -
    • Feature/annotation editing in applet
      • -
    -     		-
      -
    • Headless state operation in 2.2.1
      • -
    • Incorrect and unstable DNA pairwise alignment
      • -
    • Cut and paste of sequences with annotation
      • -
    • Feature group display state in XML
      • -
    • Feature ordering in XML
      • -
    • blc file iteration selection using filename # suffix
      • -
    • Stockholm alignment properties
      • -
    • Stockhom alignment secondary structure annotation
      • -
    • 2.2.1 applet had no feature transparency
      • -
    • Number pad keys can be used in cursor mode
      • -
    • Structure Viewer mirror image resolved
      • -
    -
    -
    2.2.1
    - 12/2/07
    -     		-
      -
    • Non standard characters can be read and displayed -
    • Annotations/Features can be imported/exported to the applet - via textbox -
    • Applet allows editing of sequence/annotation/group name - & description -
    • Preference setting to display sequence name in italics -
    • Annotation file format extended to allow Sequence_groups to - be defined -
    • Default opening of alignment overview panel can be specified - in preferences -
    • PDB residue numbering annotation added to associated - sequences -
    -     		-
      -
    • Applet crash under certain Linux OS with Java 1.6 installed -
    • Annotation file export / import bugs fixed -
    • PNG / EPS image output bugs fixed -
    -
    -
    2.2
    - 27/11/06
    -     		-
      -
    • Multiple views on alignment -
    • Sequence feature editing -
    • "Reload" alignment -
    • "Save" to current filename -
    • Background dependent text colour -
    • Right align sequence ids -
    • User-defined lower case residue colours -
    • Format Menu -
    • Select Menu -
    • Menu item accelerator keys -
    • Control-V pastes to current alignment -
    • Cancel button for DAS Feature Fetching -
    • PCA and PDB Viewers zoom via mouse roller -
    • User-defined sub-tree colours and sub-tree selection -
    • 'New Window' button on the 'Output to Text box' -
    -     		-
      -
    • New memory efficient Undo/Redo System -
    • Optimised symbol lookups and conservation/consensus - calculations -
    • Region Conservation/Consensus recalculated after edits -
    • Fixed Remove Empty Columns Bug (empty columns at end of - alignment) -
    • Slowed DAS Feature Fetching for increased robustness. -
    • Made angle brackets in ASCII feature descriptions display - correctly -
    • Re-instated Zoom function for PCA -
    • Sequence descriptions conserved in web service analysis - results -
    • Uniprot ID discoverer uses any word separated by ∣ -
    • WsDbFetch query/result association resolved -
    • Tree leaf to sequence mapping improved -
    • Smooth fonts switch moved to FontChooser dialog box. -
    -
    -
    2.1.1
    - 12/9/06
    -     		-
      -
    • Copy consensus sequence to clipboard
      • -
    -     		-
      -
    • Image output - rightmost residues are rendered if sequence - id panel has been resized
      • -
    • Image output - all offscreen group boundaries are rendered
      • -
    • Annotation files with sequence references - all elements in - file are relative to sequence position
      • -
    • Mac Applet users can use Alt key for group editing
      • -
    -
    -
    2.1
    - 22/8/06
    -     		-
      -
    • MAFFT Multiple Alignment in default Web Service list
      • -
    • DAS Feature fetching
      • -
    • Hide sequences and columns
      • -
    • Export Annotations and Features
      • -
    • GFF file reading / writing
      • -
    • Associate structures with sequences from local PDB files
      • -
    • Add sequences to exisiting alignment
      • -
    • Recently opened files / URL lists
      • -
    • Applet can launch the full application
      • -
    • Applet has transparency for features (Java 1.2 required)
      • -
    • Applet has user defined colours parameter
      • -
    • Applet can load sequences from parameter "sequencex"
      • -
    -     		-
      -
    • Redundancy Panel reinstalled in the Applet
      • -
    • Monospaced font - EPS / rescaling bug fixed
      • -
    • Annotation files with sequence references bug fixed
      • -
    -
    -
    2.08.1
    - 2/5/06
    -     		-
      -
    • Change case of selected region from Popup menu
      • -
    • Choose to match case when searching
      • -
    • Middle mouse button and mouse movement can compress / expand - the visible width and height of the alignment
      • -
    -     		-
      -
    • Annotation Panel displays complete JNet results
      • -
    -
    -
    2.08b
    - 18/4/06
    -     		  -
      -
    • Java 1.5 bug - InternalMessageDialog fix for threads
      • -
    • Righthand label on wrapped alignments shows correct value
      • -
    -
    -
    2.08
    - 10/4/06
    -     		-
      -
    • Editing can be locked to the selection area
      • -
    • Keyboard editing
      • -
    • Create sequence features from searches
      • -
    • Precalculated annotations can be loaded onto alignments
      • -
    • Features file allows grouping of features
      • -
    • Annotation Colouring scheme added
      • -
    • Smooth fonts off by default - Faster rendering
      • -
    • Choose to toggle Autocalculate Consensus On/Off
      • -
    -     		-
      -
    • Drag & Drop fixed on Linux
      • -
    • Jalview Archive file faster to load/save, sequence - descriptions saved.
      • -
    -
    -
    2.07
    - 12/12/05
    -     		-
      -
    • PDB Structure Viewer enhanced
      • -
    • Sequence Feature retrieval and display enhanced
      • -
    • Choose to output sequence start-end after sequence name for - file output
      • -
    • Sequence Fetcher WSDBFetch@EBI
      • -
    • Applet can read feature files, PDB files and can be used for - HTML form input
      • -
    -     		-
      -
    • HTML output writes groups and features
      • -
    • Group editing is Control and mouse click
      • -
    • File IO bugs
      • -
    -
    -
    2.06
    - 28/9/05
    -     		-
      -
    • View annotations in wrapped mode
      • -
    • More options for PCA viewer
      • -
    -     		-
      -
    • GUI bugs resolved
      • -
    • Runs with -nodisplay from command line
      • -
    -
    -
    2.05b
    - 15/9/05
    -     		-
      -
    • Choose EPS export as lineart or text
      • -
    • Jar files are executable
      • -
    • Can read in Uracil - maps to unknown residue
      • -
    -     		-
      -
    • Known OutOfMemory errors give warning message
      • -
    • Overview window calculated more efficiently
      • -
    • Several GUI bugs resolved
      • -
    -
    -
    2.05
    - 30/8/05
    -     		-
      -
    • Edit and annotate in "Wrapped" view
      • -
    -     		-
      -
    • Several GUI bugs resolved
      • -
    -
    -
    2.04
    - 24/8/05
    -     		-
      -
    • Hold down mouse wheel & scroll to change font size
      • -
    -     		-
      -
    • Improved JPred client reliability
      • -
    • Improved loading of Jalview files
      • -
    -
    -
    2.03
    - 18/8/05
    -     		-
      -
    • Set Proxy server name and port in preferences
      • -
    • Multiple URL links from sequence ids
      • -
    • User Defined Colours can have a scheme name and added to - Colour Menu
      • -
    • Choose to ignore gaps in consensus calculation
      • -
    • Unix users can set default web browser
      • -
    • Runs without GUI for batch processing
      • -
    • Dynamically generated Web Service Menus
      • -
    -     		-
      -
    • InstallAnywhere download for Sparc Solaris
      • -
    -
    -
    2.02
    - 18/7/05
    -     		  -
      -
    • Copy & Paste order of sequences maintains alignment - order.
      • -
    -
    -
    2.01
    - 12/7/05
    -     		-
      -
    • Use delete key for deleting selection.
      • -
    • Use Mouse wheel to scroll sequences.
      • -
    • Help file updated to describe how to add alignment - annotations.
      • -
    • Version and build date written to build properties file.
      • -
    • InstallAnywhere installation will check for updates at - launch of Jalview.
      • -
    -     		-
      -
    • Delete gaps bug fixed.
      • -
    • FileChooser sorts columns.
      • -
    • Can remove groups one by one.
      • -
    • Filechooser icons installed.
      • -
    • Finder ignores return character when searching. Return key - will initiate a search.
      -
      • -
    -
    -
    2.0
    - 20/6/05
    -     		-
      -
    • New codebase
      • -
    -     		 
    -

     

    +
  • Calculate UPGMA and NJ trees using sequence feature + similarity
    • +
  • New Export options + Applet + Development and deployment + + + Application + Applet + General + Deployment and Documentation + Application Known issues + Applet Known Issues + + + + +
    + 2.8.2
    3/12/2014     +
    + General + Application + + + Application + Deployment and Documentation + Application Known issues + Applet Known Issues + + + + +
    + 2.8.1
    4/6/2014     +
    + + + General + Application + + + + Application + Applet + Other + + + + +
    + 2.8.0b1
    + 30/1/2014     +
    + + Other improvements + + + + + + + +
    + 2.8
    12/11/2012 +
    + Application + Applet + General + Documentation and Development + + Application + Applet + General + + + + +
    + 2.7
    27/09/2011 +
    + + Application + Applet + General + Documentation and Development + + Application + Applet + General + Documentation and Development + + + + +
    + 2.6.1
    15/11/2010 +
    + + Application + + + Application + + + + + +
    + 2.6
    26/9/2010 +
    + + Application + Applet + Other + + + Application + Applet + + + + + +
    + 2.5.1
    14/6/2010 +
    + + + + Applet + Application + + + + + + +
    + 2.5
    30/4/2010 +
    + + New Capabilities + Application + Applet + Other + VAMSAS Client capabilities (Experimental) + Application command line + Applet-Application data exchange + Applet Parameters + Applet API methods + New Jalview distribution features + + + + + + + +
    + 2.3
    9/5/07 +
    + + + + + + + + + + + +
    + 2.2.1
    12/2/07 +
    + + + + + + + + + + +
    + 2.2
    27/11/06 +
    + + + + + + + + + + +
    + 2.1.1
    12/9/06 +
    + + + + + + + + + + +
    + 2.1
    22/8/06 +
    + + + + + + + + + + +
    + 2.08.1
    2/5/06 +
    + + + + + + + + + + +
    + 2.08b
    18/4/06 +
    + +   + + + + + + +
    + 2.08
    10/4/06 +
    + + + + + + + + + + +
    + 2.07
    12/12/05 +
    + + + + + + + + + + +
    + 2.06
    28/9/05 +
    + + + + + + + + + + +
    + 2.05b
    15/9/05 +
    + + + + + + + + + + +
    + 2.05
    30/8/05 +
    + + + + + + + + + + +
    + 2.04
    24/8/05 +
    + + + + + + + + + + +
    + 2.03
    18/8/05 +
    + + + + + + + + + + +
    + 2.02
    18/7/05 +
    + +   + + + + + + +
    + 2.01
    12/7/05 +
    + + + + + + + + + + +
    + 2.0
    20/6/05 +
    + + + + +   + + +