X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;h=d4bbd337d860f838cc1212a3d79761f2c465ddd8;hb=6790716940a46f86f5670294c674eadf8ca6bccf;hp=3c265faa4e3a0c97c84f7f641cf2382a22d501da;hpb=a49ce69b89678b3e6ba3c1a61b62d61cc9ee7342;p=jalview.git

diff --git a/help/html/releases.html b/help/html/releases.html
index 3c265fa..d4bbd33 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -45,6 +45,130 @@
       </td>
     </tr>
     <tr>
+      <td width="60" nowrap>
+        <div align="center">
+          <strong><a name="Jalview.2.9.1">2.9.1</a><br /> <em>1/6/2016</em></strong>
+        </div>
+      </td>
+      <td><em>General</em>
+        <ul>
+          <li></li>
+        </ul> <em>Application</em>
+        <ul>
+          <li></li>
+        </ul> <em>Applet</em>
+        <ul>
+          <li></li>
+        </ul></td>
+      <td>
+        <div align="left">
+          <em>General</em>
+          <ul>
+            <li></li>
+          </ul>
+          <em>Application</em>
+          <ul>
+            <li></li>
+          </ul>
+          <em>Applet</em>
+          <ul>
+            <li></li>
+          </ul>
+        </div>
+      </td>
+    </tr>
+    <tr>
+      <td width="60" nowrap>
+        <div align="center">
+          <strong><a name="Jalview.2.9.0b2">2.9.0b2</a><br />
+            <em>16/10/2015</em></strong>
+        </div>
+      </td>
+      <td><em>General</em>
+        <ul>
+          <li>Time stamps for signed Jalview application and applet
+            jars</li>
+        </ul></td>
+      <td>
+        <div align="left">
+          <em>Application</em>
+          <ul>
+            <li>Duplicate group consensus and conservation rows
+              shown when tree is partitioned</li>
+            <li>Erratic behaviour when tree partitions made with
+              multiple cDNA/Protein split views</li>
+          </ul>
+        </div>
+      </td>
+    </tr>
+    <tr>
+      <td width="60" nowrap>
+        <div align="center">
+          <strong><a name="Jalview.2.9.0b1">2.9.0b1</a><br />
+            <em>8/10/2015</em></strong>
+        </div>
+      </td>
+      <td><em>General</em>
+        <ul>
+          <li>Updated Spanish translations of localized text for
+            2.9</li>
+        </ul> <em>Application</em>
+      <ul>
+          <!-- <li>cDNA/Protein splitframe window geometry preserved in Jalview projects</li>-->
+          <li>Signed OSX InstallAnywhere installer<br></li>
+          <li>Support for per-sequence based annotations in BioJSON</li>
+        </ul> <em>Applet</em>
+        <ul>
+          <li>Split frame example added to applet examples page</li>
+        </ul></td>
+      <td>
+        <div align="left">
+          <em>General</em>
+          <ul>
+            <li>Mapping of cDNA to protein in split frames
+              incorrect when sequence start > 1</li>
+            <li>Broken images in filter column by annotation dialog
+              documentation</li>
+            <li>Feature colours not parsed from features file</li>
+            <li>Exceptions and incomplete link URLs recovered when
+              loading a features file containing HTML tags in feature
+              description</li>
+
+          </ul>
+          <em>Application</em>
+          <ul>
+            <li>Annotations corrupted after BioJS export and
+              reimport</li>
+            <li>Incorrect sequence limits after Fetch DB References
+              with 'trim retrieved sequences'</li>
+            <li>Incorrect warning about deleting all data when
+              deleting selected columns</li>
+            <li>Patch to build system for shipping properly signed
+              JNLP templates for webstart launch</li>
+            <li>EMBL-PDBe fetcher/viewer dialogs do not offer
+              unreleased structures for download or viewing</li>
+            <li>Tab/space/return keystroke operation of EMBL-PDBe
+              fetcher/viewer dialogs works correctly</li>
+            <li>Disabled 'minimise' button on Jalview windows
+              running on OSX to workaround redraw hang bug</li>
+            <li>Split cDNA/Protein view position and geometry not
+              recovered from jalview project</li>
+            <li>Initial enabled/disabled state of annotation menu
+              sorter 'show autocalculated first/last' corresponds to
+              alignment view</li>
+            <li>Restoring of Clustal, RNA Helices and T-Coffee
+              color schemes from BioJSON</li>
+          </ul>
+          <em>Applet</em>
+          <ul>
+            <li>Reorder sequences mirrored in cDNA/Protein split
+              frame</li>
+            <li>Applet with Jmol examples not loading correctly</li>
+          </ul>
+        </div>
+      </td>
+    </tr>
+    <tr>
       <td><div align="center">
           <strong><a name="Jalview.2.9">2.9</a><br /> <em>10/9/2015</em></strong>
         </div></td>
@@ -65,7 +189,7 @@
           </li>
           <li>Jmol integration updated to Jmol v14.2.14</li>
           <li>Import and export of Jalview alignment views as <a
-            href="">BioJSON</a></li>
+            href="features/bioJsonFormat.html">BioJSON</a></li>
           <li>New alignment annotation file statements for
             reference sequences and marking hidden columns</li>
           <li>Reference sequence based alignment shading to
@@ -280,27 +404,6 @@
       </td>
     </tr>
     <tr>
-      <td width="60" nowrap>
-        <div align="center">
-          <strong><a name="Jalview.2.8.2b1">2.8.2b1</a><br />
-            <em>15/12/2014</em></strong>
-        </div>
-      </td>
-      <td>
-        <div align="center"></div>
-      </td>
-      <td>
-        <div align="center">
-          <ul>
-            <li>Reinstated the display of default example file on
-              startup</li>
-            <li>All pairs shown in Jalview window when viewing
-              result of pairwise alignment</li>
-          </ul>
-        </div>
-      </td>
-    </tr>
-    <tr>
       <td><div align="center">
           <strong><a name="Jalview.2.8.2">2.8.2</a><br /> <em>3/12/2014</em></strong>
         </div></td>
@@ -606,7 +709,7 @@
     <tr>
       <td><div align="center">
           <strong><a name="Jalview.2.8.0b1">2.8.0b1</a><br />
-          <em>30/1/2014</em></strong>
+            <em>30/1/2014</em></strong>
         </div></td>
       <td>
         <ul>
@@ -1245,6 +1348,7 @@
         <ul>
           <li>URL links generated from description line for
             regular-expression based URL links (applet and application)
+
           
           <li>Non-positional feature URL links are shown in link
             menu</li>
@@ -1288,10 +1392,7 @@
             between different screens.</li>
           <li>New preference items for sequence ID tooltip and
             consensus annotation</li>
-          <li>Client to submit sequences and IDs to <a
-            href="webServices/index.html#envision2">Envision2</a>
-            Workflows
-          </li>
+          <li>Client to submit sequences and IDs to Envision2 Workflows</li>
           <li><em>Vamsas Capabilities</em>
             <ul>
               <li>Improved VAMSAS synchronization (Jalview archive
@@ -1699,6 +1800,7 @@
           <li>Cancel button for DAS Feature Fetching
           <li>PCA and PDB Viewers zoom via mouse roller
           <li>User-defined sub-tree colours and sub-tree selection
+
           
           <li>'New Window' button on the 'Output to Text box'
         </ul>
@@ -1713,6 +1815,7 @@
           <li>Fixed Remove Empty Columns Bug (empty columns at end
             of alignment)
           <li>Slowed DAS Feature Fetching for increased robustness.
+
           
           <li>Made angle brackets in ASCII feature descriptions
             display correctly
@@ -1724,6 +1827,7 @@
           <li>WsDbFetch query/result association resolved
           <li>Tree leaf to sequence mapping improved
           <li>Smooth fonts switch moved to FontChooser dialog box.
+
           
         </ul>
       </td>