X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;h=dcf04c5bdc2e6514625b7f379798e32caa0f5a8a;hb=3446323f14bb8a2842cb83f74ed3f41c99b62759;hp=4e2502def9e46898e48b771c85d08f4a1b75c452;hpb=2b8019a244c53a24b2a13ea299ba8af02f90ff3b;p=jalview.git
diff --git a/help/html/releases.html b/help/html/releases.html
index 4e2502d..dcf04c5 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -58,12 +58,14 @@
Default RNA SS symbol to 'matching bracket' for manual entry
RNA Structure consensus indicates wc-only '()', canonical '[]' and invalid '{}' base pair populations for each column
Feature settings popup menu options for showing or hiding columns containing a feature
+ Edit selected group by double clicking on group and sequence associated annotation labels
Application
+ - UniProt - PDB protein structure mappings with the EMBL-EBI PDBe SIFTS database
- Updated download sites used for Rfam and Pfam sources to xfam.org
- Disabled Rfam(Full) in the sequence fetcher
- Show residue labels in Chimera when mousing over sequences in Jalview
@@ -74,10 +76,11 @@
- Allow groovy scripts that call Jalview.getAlignFrames() to run in headless mode
- Support for creating new alignment calculation workers from groovy scripts
- Store/restore reference sequence in Jalview projects
- - Chain codes for a sequence's PDB associations are now saved/restored from project
- - Double click on an entry in Jalview's database chooser opens a sequence fetcher
- - Free-text search client for UniProt using the UniProt REST API
-
+ - Chain codes for a sequence's PDB associations are now saved/restored from project
+ - Double click on an entry in Jalview's database chooser opens a sequence fetcher
+ - Free-text search client for UniProt using the UniProt REST API
+ - -nonews command line parameter to prevent the news reader opening
+
Applet
@@ -102,7 +105,8 @@
- RNA Structure consensus only computed for '()' base pair annotation
- Enabling 'Ignore Gaps' results in zero scores for all base pairs in RNA Structure Consensus
- Extend selection with columns containing feature not working
-
+ - Pfam format writer puts extra space at beginning of sequence
+ - Incomplete sequence extracted from pdb entry 3a6s
Application
@@ -117,12 +121,13 @@
Hide columns not mirrored in complement view in a cDNA/Protein splitframe
Cannot save/restore representative sequence from project when only one sequence is represented
Disabled 'Best Uniprot Coverage' option in Structure Chooser
- Modifying 'Ignore Gaps' on consensus or structure consensus didn't refresh annotation panel
+ Modifying 'Ignore Gaps' on consensus or structure consensus didn't refresh annotation panel
+ View mapping in structure view shows mappings between sequence and all chains in a PDB file
Applet
-
+ - Incorrect columns are selected when hidden columns present before start of sequence