X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;h=df9d9af52c508f59717e5fa93e6adc61d305f84a;hb=387d0a731d8da7880217c4b31a239c45f1c6ca77;hp=81e75eaec85650832f1ed877dfdb422fb0bcb728;hpb=a990c2c6facfd04d61d316dcafba31d03747d162;p=jalview.git
diff --git a/help/html/releases.html b/help/html/releases.html
index 81e75ea..df9d9af 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -70,8 +70,74 @@ li:before {
+ |
+
+
+
+ -
+ Faster and more efficient management and
+ rendering of sequence features
+
+ -
+ More reliable Ensembl fetching with HTTP
+ 429 rate limit request hander
+
+ -
+ Structure views don't get updated unless
+ their colours have changed
+
+
+ - Example groovy script for generating a matrix of percent identity scores for current alignment.
+ |
+
+
+
+ - Structures with whitespace chainCode cannot be viewed in Chimera
+ - Protein annotation panel too high in CDS/Protein view
+
+ - Can't edit the query after the server error warning icon is shown in Uniprot and PDB Free Text Search Dialogs
+
+ - Slow EnsemblGenome ID lookup
+ - Race condition when parsing sequence ID strings in parallel
+ - Hidden column marker in last column not rendered when switching back from Wrapped to normal view
+ - Annotation display corrupted when scrolling right in unwapped alignment view
+ - Existing features on subsequence incorrectly relocated when full sequence retrieved from database
+ - Overview windows are also closed when alignment window is closed
+
+ Applet
+
+ - Concurrent modification exception when closing alignment panel
+
+ |
+
+
+
+
+ |
+
+ New features in Jalview Desktop
+
+ -
+ Uniprot Sequence Fetcher now uses web API at uniprot.org
+
+ - HTTPS used for all connections to ebi.ac.uk
+
+
+ |
+
+ |
+
+
+
+
|
@@ -82,26 +148,72 @@ li:before {
in grey (sequences used to be coloured grey, and gaps were
white)
- Overview tab in Jalview Desktop Preferences
+
+ Overview tab in Jalview Desktop
+ Preferences
+
+
+ Overview updates immediately on increase
+ in size and progress bar shown as higher resolution
+ overview is recalculated
+
+
|
-
+ Overview window redraws every hidden
+ column region row by row
+
+ -
duplicate protein sequences shown after
retrieving Ensembl crossrefs for sequences from Uniprot
- - Overview window throws NPE if show boxes
+
-
+ Overview window throws NPE if show boxes
format setting is unticked
-
Groups are coloured wrongly in overview
if group has show boxes format setting unticked
+ -
+ Redraw problems when
+ autoscrolling whilst dragging current selection group to
+ include sequences and columns not currently displayed
+
+ -
+ Not all chains are mapped when multimeric
+ assemblies are imported via CIF file
+
+ -
+ Gap colour in custom colourscheme is not
+ displayed when threshold or conservation colouring is also
+ enabled.
+
+ -
+ JABAWS 2.2 services report wrong JABAWS
+ server version
+
+ -
+ Jalview continues to scroll after
+ dragging a selected region off the visible region of the
+ alignment
+
+ -
+ Cannot apply annotation based
+ colourscheme to all groups in a view
+
+ -
+ IDs don't line up with sequences
+ initially after font size change using the Font chooser or
+ middle-mouse zoom
+
|
-
+
@@ -1356,6 +1468,10 @@ li:before {
after clicking on it to create new annotation for a
column.
+
+ Null Pointer Exception raised when
+ pressing Add on an orphaned cut'n'paste window.
+
|