X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;h=dfb747f64c91a7e2208ec7eba763bed231265ba2;hb=ccc31f21ed36c2e43b5a1b450846284151c680bb;hp=37ad3697dd85c417e66a28e2b302ae8c413eb8d5;hpb=e24b43f4958cc39d8c42863d1c25719469aff826;p=jalview.git

diff --git a/help/html/releases.html b/help/html/releases.html
index 37ad369..dfb747f 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -53,6 +53,7 @@
       <td><em>General</em>
         <ul>
             <li><!-- JAL---></li>
+            <li><!-- JAL-192 --->Alignment ruler shows positions relative to reference sequence</li>
         </ul> <em>Application</em>
         <ul>
             <li><!-- JAL---></li>
@@ -60,6 +61,7 @@
             <li><!-- JAL-1855, JAL-2113, JAL-2114-->Upgrade to EMBL XML 1.2 for ENA record retrieval</li>
             <li><!--  JAL 1812 -->New 'execute Groovy script' option in an alignment window's Calculate menu</li>
             <li><!--  JAL 1812 -->Allow groovy scripts that call Jalview.getAlignFrames() to run in headless mode</li>
+            <li><!-- JAL-1369 --->Store/restore reference sequence in Jalview projects</li>
              
         </ul> <em>Applet</em>
         <ul>
@@ -76,6 +78,8 @@
             <li><!-- JAL-2067, JAL-  -->Tidied up links in help file table of contents</li>
             <li><!-- JAL-2072  -->Feature based tree calculation not shown for DNA alignments</li>
             <li><!-- JAL-2075  -->Hidden columns ignored during feature based tree calculation</li>
+            <li><!-- JAL-2065  -->Alignment view stops updating when show unconserved enabled for group on alignment</li>
+            <li><!--  JAL-2086  -->Cannot insert gaps into sequence when set as reference</li>
             
           </ul>
           <em>Application</em>
@@ -85,6 +89,10 @@
             <li><!-- JAL-1552-->URLs and links can imported by drag'n'drop on OSX webstart</li>
             <li><!-- JAL-2030-->InstallAnywhere distribution fails when launching Chimera</li>
             <li><!-- JAL-2080-->Jalview very slow to launch via webstart (also hotfix for 2.9.0b2)</li>
+            <li><!--  JAL-2085  -->Cannot save project when view has a reference sequence defined</li>
+            <li><!--  JAL-1011  -->Columns are suddenly selected in other alignments and views when revealing hidden columns</li>
+            <li><!--  JAL-1989  -->Hide columns not mirrored in complement view in a cDNA/Protein splitframe</li>
+            <li><!--  JAL-1369 -->Cannot save/restore representative sequence from project when only one sequence is represented</li>
             <!--  may exclude, this is an external service stability issue  JAL-1941 /> RNA 3D structure not added via DSSR service</li> -->
           </ul>
           <em>Applet</em>