X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;h=dfb747f64c91a7e2208ec7eba763bed231265ba2;hb=ebca5f7880f838a5564dd419274ad6025b456dab;hp=0bb5fb7fb45ba0d6a09ab69e8f874b270cf6263b;hpb=8cea0d75ef3231f205ae4fe07d7c7dd5551b01d6;p=jalview.git

diff --git a/help/html/releases.html b/help/html/releases.html
index 0bb5fb7..dfb747f 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -47,32 +47,57 @@
     <tr>
       <td width="60" nowrap>
         <div align="center">
-          <strong><a name="Jalview.2.9.1">2.9.1</a><br /> <em>1/6/2016</em></strong>
+          <strong><a name="Jalview.2.9.1">2.9.1</a><br /> <em>21/6/2016</em></strong>
         </div>
       </td>
       <td><em>General</em>
         <ul>
-          <li></li>
+            <li><!-- JAL---></li>
+            <li><!-- JAL-192 --->Alignment ruler shows positions relative to reference sequence</li>
         </ul> <em>Application</em>
         <ul>
-          <li></li>
+            <li><!-- JAL---></li>
+            <li><!-- JAL-2027-->Support for reverse-complement coding regions in ENA and EMBL</li>
+            <li><!-- JAL-1855, JAL-2113, JAL-2114-->Upgrade to EMBL XML 1.2 for ENA record retrieval</li>
+            <li><!--  JAL 1812 -->New 'execute Groovy script' option in an alignment window's Calculate menu</li>
+            <li><!--  JAL 1812 -->Allow groovy scripts that call Jalview.getAlignFrames() to run in headless mode</li>
+            <li><!-- JAL-1369 --->Store/restore reference sequence in Jalview projects</li>
+             
         </ul> <em>Applet</em>
         <ul>
-          <li></li>
+            <li><!-- JAL---></li>
         </ul></td>
       <td>
         <div align="left">
           <em>General</em>
           <ul>
-            <li></li>
+            <li><!-- JAL-2077 -->reinstate CTRL-click for opening pop-up menu on OSX</li>
+            <li><!-- JAL-2018-->Export features in Jalview format (again) includes graduated colourschemes</li>
+            <li><!-- JAL-1722, JAL-2001-->More responsive when working with big alignments and lots of hidden columns</li>
+            <li><!-- JAL-2053-->hidden column markers not always rendered at right of alignment window</li>
+            <li><!-- JAL-2067, JAL-  -->Tidied up links in help file table of contents</li>
+            <li><!-- JAL-2072  -->Feature based tree calculation not shown for DNA alignments</li>
+            <li><!-- JAL-2075  -->Hidden columns ignored during feature based tree calculation</li>
+            <li><!-- JAL-2065  -->Alignment view stops updating when show unconserved enabled for group on alignment</li>
+            <li><!--  JAL-2086  -->Cannot insert gaps into sequence when set as reference</li>
+            
           </ul>
           <em>Application</em>
           <ul>
-            <li></li>
+            <li><!-- JAL-1944 not yet fixed Error thrown when exporting a view with hidden sequences as flat-file alignment--></li>
+            <li><!-- JAL-1911-->Corrupt preferences for SVG, EPS & HTML output when running on non-gb/us i18n platforms</li>
+            <li><!-- JAL-1552-->URLs and links can imported by drag'n'drop on OSX webstart</li>
+            <li><!-- JAL-2030-->InstallAnywhere distribution fails when launching Chimera</li>
+            <li><!-- JAL-2080-->Jalview very slow to launch via webstart (also hotfix for 2.9.0b2)</li>
+            <li><!--  JAL-2085  -->Cannot save project when view has a reference sequence defined</li>
+            <li><!--  JAL-1011  -->Columns are suddenly selected in other alignments and views when revealing hidden columns</li>
+            <li><!--  JAL-1989  -->Hide columns not mirrored in complement view in a cDNA/Protein splitframe</li>
+            <li><!--  JAL-1369 -->Cannot save/restore representative sequence from project when only one sequence is represented</li>
+            <!--  may exclude, this is an external service stability issue  JAL-1941 /> RNA 3D structure not added via DSSR service</li> -->
           </ul>
           <em>Applet</em>
           <ul>
-            <li></li>
+            <li><!--  --></li>
           </ul>
         </div>
       </td>
@@ -1392,10 +1417,7 @@
             between different screens.</li>
           <li>New preference items for sequence ID tooltip and
             consensus annotation</li>
-          <li>Client to submit sequences and IDs to <a
-            href="webServices/index.html#envision2">Envision2</a>
-            Workflows
-          </li>
+          <li>Client to submit sequences and IDs to Envision2 Workflows</li>
           <li><em>Vamsas Capabilities</em>
             <ul>
               <li>Improved VAMSAS synchronization (Jalview archive