X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;h=e1640fc4cab268f63aefde0b57df489ffc9bf67a;hb=134576f5b34894218bdc4c5ce5e27fa18ad973bd;hp=0ce217b70bd0b8bf46c111e8f9c1449ebc65b1b8;hpb=0b468cedc126cf24570617480cf5f99ddff3d8bb;p=jalview.git

diff --git a/help/html/releases.html b/help/html/releases.html
index 0ce217b..e1640fc 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -47,18 +47,125 @@
     <tr>
       <td width="60" nowrap>
         <div align="center">
-          <strong><a name="Jalview.2.9.0b2">2.10.0b1</a><br />
-            <em>18/10/2016</em></strong>
+          <strong><a name="Jalview.2.10.1">2.10.1</a><br />
+            <em>22/11/2016</em></strong>
+        </div>
+      </td>
+      <td><div align="left">
+	    <em>General</em>
+            <ul>
+	      <li><!-- JAL-98 -->Improved memory usage: sparse arrays used for all consensus calculations</li>
+	      <li><!-- JAL- --></li>
+          </ul>
+          <em>Application</em>
+          <ul>
+        <li><!-- JAL-1723 -->Sequence ID tool tips have been tamed (databases sorted alphabetically, abridged ID sets) </li>
+   	    <li><!-- JAL-2282-->New replacement token for creating URLs <em>just</em> from database cross references. Users with custom links will receive a warning dialog asking them to update their preferences.</li>
+	    <li><!-- JAL-2287-->Cancel button and escape listener on dialog warning user about disconnecting Jalview from a Chimera session</li>
+	    <li><!-- JAL-2281-->Custom URL links for database cross-references are matched to database name regardless of case</li>
+	    <li></li>
+	    
+
+          </ul>
+          <em>Applet</em>
+          <ul>
+          </ul>
+          <em>Build and deployment</em>
+          <ul>
+            <li></li>
+          </ul>
+	  </div>
+      </td>
+      <td>
+        <div align="left">
+          <em>General</em>
+          <ul>
+	    <li><!-- JAL-2286 -->Columns with more than one modal residue are not coloured or thresholded according to percent identity (first observed in Jalview 2.8.2)</li>
+	    <li><!-- JAL-2301 -->Threonine incorrectly reported as not hydrophobic</li>
+	    <li><!-- JAL-2318 -->Updates to documentation pages (above PID threshold, amino acid properties)</li>
+	    <li><!-- JAL-2292 -->Lower case residues in sequences are not reported as mapped to residues in a structure file in the View Mapping report</li>
+          </ul>
+          <em>Application</em>
+          <ul>
+	    <li><!-- JAL-2282-->Custom URL links for specific database names without regular expressions also offer invalid links from Sequence ID</li>
+	    <li><!-- JAL-2315-->Removing a single configured link in the URL links pane in Connections preferences doesn't actually update Jalview configuration</li>
+	    <li><!-- JAL-2272-->CTRL-Click on a selected region to open the alignment area popup menu doesn't work on El-Capitan</li>
+	    <li><!-- JAL-2280 -->Jalview doesn't offer to associate mmCIF files with similarly named sequences if dropped onto the alignment</li>
+	    <li><!-- JAL-2312 -->Additional mappings are shown for PDB entries where more chains exist in the PDB accession than are reported in the SIFTS file</li>
+	    <li><!-- JAL-2317-->Certain structures do not get mapped to the structure view when displayed with Chimera</li>
+	    <li><!-- JAL-2317-->No chains shown in the Chimera view panel's View->Show Chains submenu</li>
+      
+      <li><!-- --></li>
+	    <li><!-- --></li>
+          </ul>
+          <em>Applet</em>
+          <ul>
+          </ul>
+          <em>Build and deployment</em>
+          <ul>
+            <li><!-- JAL-2308, -->Failing/passing unit tests</li>
+          </ul>
+          <em>New Known Issues</em>
+          <ul>
+            <li></li>
+          </ul>
+        </div>
+      </td>
+    </tr>
+      <td width="60" nowrap>
+        <div align="center">
+          <strong><a name="Jalview.2.10.0b1">2.10.0b1</a><br />
+            <em>25/10/2016</em></strong>
         </div>
       </td>
       <td><em>Application</em>
         <ul>
+          <li>3D Structure chooser opens with 'Cached structures'
+            view if structures already loaded</li>
+          <li>Progress bar reports models as they are loaded to
+            structure views</li>
         </ul></td>
       <td>
         <div align="left">
+          <em>General</em>
+          <ul>
+            <li>Colour by conservation always enabled and no tick
+              shown in menu when BLOSUM or PID shading applied</li>
+            <li>FER1_ARATH and FER2_ARATH labels were switched in
+              example sequences/projects/trees</li>
+          </ul>
           <em>Application</em>
           <ul>
+            <li>Jalview projects with views of local PDB structure
+              files saved on Windows cannot be opened on OSX</li>
+            <li>Multiple structure views can be opened and
+              superposed without timeout for structures with multiple
+              models or multiple sequences in alignment</li>
+            <li>Cannot import or associated local PDB files without
+              a PDB ID HEADER line</li>
+            <li>RMSD is not output in Jmol console when
+              superposition is performed</li>
+            <li>Drag and drop of URL from Browser fails for Linux
+              and OSX versions earlier than El Capitan</li>
             <li>ENA client ignores invalid content from ENA server</li>
+            <li>Exceptions are not raised in console when ENA
+              client attempts to fetch non-existent IDs via Fetch DB
+              Refs UI option</li>
+            <li>Exceptions are not raised in console when a new
+              view is created on the alignment</li>
+            <li>OSX right-click fixed for group selections:
+              CMD-click to insert/remove gaps in groups and CTRL-click
+              to open group pop-up menu</li>
+          </ul>
+          <em>Build and deployment</em>
+          <ul>
+            <li>URL link checker now copes with multi-line anchor
+              tags</li>
+          </ul>
+          <em>New Known Issues</em>
+          <ul>
+            <li>Drag and drop from URL links in browsers do not
+              work on Windows</li>
           </ul>
         </div>
       </td>
@@ -362,6 +469,10 @@
               <!-- JAL-1306 -->Quality and Conservation are now shown on
               load even when Consensus calculation is disabled
             </li>
+            <li>
+              <!-- JAL-1932 -->Remove right on penultimate column of 
+              alignment does nothing
+            </li>
           </ul>
           <em>Application</em>
           <ul>
@@ -508,6 +619,10 @@
               <!-- JAL-1887 -->Incorrect start and end reported for PDB
               to sequence mapping in 'View Mappings' report
             </li>
+            <li>
+              <!-- JAL-2284 -->Unable to read old Jalview projects that
+              contain non-XML data added after Jalvew wrote project.
+            </li>
             <!--  may exclude, this is an external service stability issue  JAL-1941 
             -- > RNA 3D structure not added via DSSR service</li> -->
           </ul>
@@ -576,6 +691,9 @@
         </ul> <em>Applet</em>
         <ul>
           <li>Split frame example added to applet examples page</li>
+        </ul><em>Build and Deployment</em>
+        <ul>
+          <li><!--  JAL-1888 -->New ant target for running Jalview's test suite</li>
         </ul></td>
       <td>
         <div align="left">