X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;h=e16e1196371df1dff9327381443fa88f6c3b9829;hb=4fe43371b9524afd658c97c8767cf7e6dc84459e;hp=eeae22649fe69dcd0a6220eb3dfad1bc7599ebff;hpb=767874fdb51d05e0e364cd6c53d6a55d8c3f82e8;p=jalview.git

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     <td ><div align="center"><em><strong>Issues Resolved</strong></em></div></td>
   </tr>
   <tr> 
+    <td><div align="center"><strong>2.2.1</strong><br>
+        12/2/07</div></td>
+    <td><ul>
+        <li>Non standard characters can be read and displayed
+        <li>Annotations/Features can be imported/exported to the applet via textbox
+        <li>Applet allows editing of sequence/annotation/group name &amp; description
+        <li>Preference setting to display sequence name in italics
+        <li>Annotation file format extended to allow Sequence_groups
+        to be defined
+        <li>Default opening of alignment overview panel can be specified in
+        preferences
+        <li>PDB residue numbering annotation added to associated sequences
+        </ul></td>
+    <td> <ul>
+        <li>Applet crash under certain Linux OS with Java 1.6 installed
+        <li>Annotation file export / import bugs fixed
+        <li>PNG / EPS image output bugs fixed</ul></td>
+  </tr>
+  <tr> 
+    <td><div align="center"><strong>2.2</strong><br>
+        27/11/06</div></td>
+    <td><ul>
+        <li>Multiple views on alignment 
+        <li>Sequence feature editing 
+        <li>&quot;Reload&quot; alignment 
+        <li>&quot;Save&quot; to current filename 
+        <li>Background dependent text colour 
+        <li>Right align sequence ids 
+        <li>User-defined lower case residue colours 
+        <li>Format Menu 
+        <li>Select Menu 
+        <li>Menu item accelerator keys 
+        <li>Control-V pastes to current alignment 
+        <li>Cancel button for DAS Feature Fetching 
+        <li>PCA and PDB Viewers zoom via mouse roller 
+        <li>User-defined sub-tree colours and sub-tree selection 
+        <li>'New Window' button on the 'Output to Text box' </ul></td>
+    <td> <ul>
+        <li>New memory efficient Undo/Redo System 
+        <li>Optimised symbol lookups and conservation/consensus calculations 
+        <li>Region Conservation/Consensus recalculated after edits 
+        <li>Fixed Remove Empty Columns Bug (empty columns at end of alignment) 
+        <li>Slowed DAS Feature Fetching for increased robustness. 
+        <li>Made angle brackets in ASCII feature descriptions display correctly 
+        <li>Re-instated Zoom function for PCA 
+        <li>Sequence descriptions conserved in web service analysis results 
+        <li>Uniprot ID discoverer uses any word separated by &#8739; 
+        <li>WsDbFetch query/result association resolved 
+        <li>Tree leaf to sequence mapping improved 
+        <li>Smooth fonts switch moved to FontChooser dialog box. </ul></td>
+  </tr>
+  <tr> 
+    <td> <div align="center"><strong>2.1.1</strong><br>
+        12/9/06</div></td>
+    <td><ul>
+        <li>Copy consensus sequence to clipboard</li>
+      </ul></td>
+    <td><ul>
+        <li>Image output - rightmost residues are rendered if sequence id panel 
+          has been resized</li>
+        <li>Image output - all offscreen group boundaries are rendered </li>
+        <li>Annotation files with sequence references - all elements in file are 
+          relative to sequence position</li>
+        <li>Mac Applet users can use Alt key for group editing</li>
+      </ul></td>
+  </tr>
+  <tr> 
+    <td><div align="center"><strong>2.1</strong><br>
+        22/8/06</div></td>
+    <td><ul>
+        <li>MAFFT Multiple Alignment in default Web Service list</li>
+        <li>DAS Feature fetching</li>
+        <li>Hide sequences and columns</li>
+        <li>Export Annotations and Features</li>
+        <li>GFF file reading / writing</li>
+        <li>Associate structures with sequences from local PDB files</li>
+        <li>Add sequences to exisiting alignment</li>
+        <li>Recently opened files / URL lists</li>
+        <li>Applet can launch the full application</li>
+        <li>Applet has transparency for features (Java 1.2 required)</li>
+        <li>Applet has user defined colours parameter</li>
+        <li>Applet can load sequences from parameter &quot;sequence<em>x</em>&quot;</li>
+      </ul></td>
+    <td><ul>
+        <li>Redundancy Panel reinstalled in the Applet</li>
+        <li>Monospaced font - EPS / rescaling bug fixed</li>
+        <li>Annotation files with sequence references bug fixed</li>
+      </ul></td>
+  </tr>
+  <tr> 
+    <td><div align="center"><strong>2.08.1</strong><br>
+        2/5/06</div></td>
+    <td><ul>
+        <li>Change case of selected region from Popup menu</li>
+        <li>Choose to match case when searching</li>
+        <li>Middle mouse button and mouse movement can compress / expand the visible 
+          width and height of the alignment</li>
+      </ul></td>
+    <td><ul>
+        <li>Annotation Panel displays complete JNet results</li>
+      </ul></td>
+  </tr>
+  <tr> 
+    <td><div align="center"><strong>2.08b</strong><br>
+        18/4/06</div></td>
+    <td>&nbsp;</td>
+    <td><ul>
+        <li>Java 1.5 bug - InternalMessageDialog fix for threads</li>
+        <li>Righthand label on wrapped alignments shows correct value</li>
+      </ul></td>
+  </tr>
+  <tr> 
     <td><div align="center"><strong>2.08</strong><br>
         10/4/06</div></td>
     <td><ul>