-
+
Release |
New Features |
Issues Resolved |
-
+
+ 2.3
+ 8/5/07 |
+
+ - Jmol 11.0.2 integration
+ - PDB views stored in Jalview XML files
+ - Slide sequences
+ - Edit sequence in place
+ - EMBL CDS features
+ - DAS Feature mapping
+ - Feature ordering
+ - Alignment Properties
+ - Annotation Scores
+ - Sort by scores
+ - Feature/annotation editing in applet
+ |
+
+ - Headless state operation in 2.2.1
+ - Incorrect and unstable DNA pairwise alignment
+ - Cut and paste of sequences with annotation
+ - Feature group display state in XML
+ - Feature ordering in XML
+ - blc file iteration selection using filename # suffix
+ - Stockholm alignment properties
+ - Stockhom alignment secondary structure annotation
+ - 2.2.1 applet had no feature transparency
+ - Number pad keys can be used in cursor mode
+ - Structure Viewer mirror image resolved
+
+ |
+
+
+
+ 2.2.1
+ 12/2/07 |
+
+ - Non standard characters can be read and displayed
+
- Annotations/Features can be imported/exported to the applet via textbox
+
- Applet allows editing of sequence/annotation/group name & description
+
- Preference setting to display sequence name in italics
+
- Annotation file format extended to allow Sequence_groups
+ to be defined
+
- Default opening of alignment overview panel can be specified in
+ preferences
+
- PDB residue numbering annotation added to associated sequences
+
|
+
+ - Applet crash under certain Linux OS with Java 1.6 installed
+
- Annotation file export / import bugs fixed
+
- PNG / EPS image output bugs fixed
|
+
+
+ 2.2
+ 27/11/06 |
+
+ - Multiple views on alignment
+
- Sequence feature editing
+
- "Reload" alignment
+
- "Save" to current filename
+
- Background dependent text colour
+
- Right align sequence ids
+
- User-defined lower case residue colours
+
- Format Menu
+
- Select Menu
+
- Menu item accelerator keys
+
- Control-V pastes to current alignment
+
- Cancel button for DAS Feature Fetching
+
- PCA and PDB Viewers zoom via mouse roller
+
- User-defined sub-tree colours and sub-tree selection
+
- 'New Window' button on the 'Output to Text box'
|
+
+ - New memory efficient Undo/Redo System
+
- Optimised symbol lookups and conservation/consensus calculations
+
- Region Conservation/Consensus recalculated after edits
+
- Fixed Remove Empty Columns Bug (empty columns at end of alignment)
+
- Slowed DAS Feature Fetching for increased robustness.
+
- Made angle brackets in ASCII feature descriptions display correctly
+
- Re-instated Zoom function for PCA
+
- Sequence descriptions conserved in web service analysis results
+
- Uniprot ID discoverer uses any word separated by ∣
+
- WsDbFetch query/result association resolved
+
- Tree leaf to sequence mapping improved
+
- Smooth fonts switch moved to FontChooser dialog box.
|
+
+
+ | 2.1.1
+ 12/9/06 |
+
+ - Copy consensus sequence to clipboard
+ |
+
+ - Image output - rightmost residues are rendered if sequence id panel
+ has been resized
+ - Image output - all offscreen group boundaries are rendered
+ - Annotation files with sequence references - all elements in file are
+ relative to sequence position
+ - Mac Applet users can use Alt key for group editing
+ |
+
+
2.1
- 21/8/06 |
+ 22/8/06
- MAFFT Multiple Alignment in default Web Service list
- DAS Feature fetching
@@ -23,6 +122,7 @@
- Applet can launch the full application
- Applet has transparency for features (Java 1.2 required)
- Applet has user defined colours parameter
+ - Applet can load sequences from parameter "sequencex"
|
- Redundancy Panel reinstalled in the Applet
@@ -30,20 +130,20 @@
- Annotation files with sequence references bug fixed
|
-
+
2.08.1
2/5/06 |
- Change case of selected region from Popup menu
- Choose to match case when searching
- - Middle mouse button and mouse movement can compress / expand the visible
+
- Middle mouse button and mouse movement can compress / expand the visible
width and height of the alignment
|
- Annotation Panel displays complete JNet results
|
-
+
2.08b
18/4/06 |
|
@@ -52,7 +152,7 @@
Righthand label on wrapped alignments shows correct value
-
+
2.08
10/4/06 |
|
- Drag & Drop fixed on Linux
- - Jalview Archive file faster to load/save, sequence descriptions saved.
+
- Jalview Archive file faster to load/save, sequence descriptions saved.
|
-
+
2.07
12/12/05 |
@@ -79,7 +179,7 @@
- Sequence Feature retrieval and display enhanced
- Choose to output sequence start-end after sequence name for file output
- Sequence Fetcher WSDBFetch@EBI
- - Applet can read feature files, PDB files and can be used for HTML
+
- Applet can read feature files, PDB files and can be used for HTML
form input
|
@@ -88,7 +188,7 @@
- File IO bugs
|
-
+
2.06
28/9/05 |
@@ -100,7 +200,7 @@
- Runs with -nodisplay from command line
|
-
+
| 2.05b
15/9/05 |
@@ -114,7 +214,7 @@
- Several GUI bugs resolved
|
-
+
2.05
30/8/05 |
@@ -124,7 +224,7 @@
- Several GUI bugs resolved
|
-
+
2.04
24/8/05 |
@@ -135,7 +235,7 @@
- Improved loading of Jalview files
|
-
+
| 2.03
18/8/05 |
@@ -151,7 +251,7 @@
- InstallAnywhere download for Sparc Solaris
|
-
+
| 2.02
18/7/05 |
|
@@ -159,7 +259,7 @@
Copy & Paste order of sequences maintains alignment order.
-
+
2.01
12/7/05 |
@@ -174,12 +274,12 @@
- FileChooser sorts columns.
- Can remove groups one by one.
- Filechooser icons installed.
- - Finder ignores return character when searching. Return key will initiate
+
- Finder ignores return character when searching. Return key will initiate
a search.
|
-
+
| 2.0
20/6/05 |
|