X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;h=efe65205ecd9e309a2bca6d14cb59467abc43347;hb=fa87a9e2098c49021abe2456819979b8e68c9566;hp=528d6356352ef04aa7197f84916aa584da882edf;hpb=efe83911831f33cef73ac0945c40473529e97f7b;p=jalview.git
diff --git a/help/html/releases.html b/help/html/releases.html
index 528d635..efe6520 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -67,19 +67,89 @@ li:before {
+
+
+
+ |
+ |
+
+
+
+ -
+ DAS sequence retrieval and annotation capabilities removed from the Jalview Desktop
+
+
+ |
+
+
+
+
+ |
+
+
+
+ -
+ Windows File Shortcuts can be dragged
+ onto the Jalview Desktop
+
+
+ |
+
+
+
+ -
+ Clustal files with sequence positions in
+ right-hand column parsed correctly
+
+ -
+ F2/Keyboard mode edits work when Overview
+ window has input focus
+
+ -
+ Wrap view - export to SVG - IDs shown but
+ not alignment area in exported graphic
+
+ -
+ Drag URL from chrome, firefox, IE to
+ Jalview desktop on Windows doesn't open file
+ Dragging the currently open URL and links from a page viewed in Firefox or Chrome on
+ Windows is now fully supported. If you are using Edge, only
+ links in the page can be dragged, and with Internet Explorer, only
+ the currently open URL in the browser can be dropped onto
+ Jalview.
+
+ -
+
+
+
+ |
+
|
-
- Structure Chooser controls to
- control superposition of multiple structures and open
- structures in existing views
+ New Structure Chooser control
+ for disabling automatic superposition of multiple
+ structures and open structures in existing views
-
Mouse cursor changes to indicate Sequence
@@ -96,7 +166,7 @@ li:before {
-
Improved performance when rendering lots
- of features
+ of features (particularly when transparency is disabled)
@@ -112,6 +182,25 @@ li:before {
overlapping alignment panel
+ Overview doesn't show end of unpadded
+ sequence as gaps
+
+
+ Cross-reference handling
+ improved: CDS not handled correctly if transcript has no
+ UTR
+
+
+ Secondary structure and temperature
+ factor annotation not added to sequence when local PDB
+ file associated with it by drag'n'drop or structure
+ chooser
+
+
+ Answering 'No' to PDB Autoassociate
+ dialog doesn't import PDB files dropped on an alignment
+
+
Linked scrolling via protein horizontal
scroll bar doesn't work for some CDS/Protein views
@@ -124,8 +213,8 @@ li:before {
columns in annotation row
- Preferences panel's ID Width control is
- honored in interactive and batch mode
+ Preferences panel's ID Width control is not
+ honored in batch mode
Linked sequence highlighting doesn't work
@@ -146,19 +235,29 @@ li:before {
as generated by CONSURF)
+ Uniprot 'sequence variant' features
+ tooltip doesn't include a text description of mutation
+
+
+ Invert displayed features very slow when
+ structure and/or overview windows are also shown
+
+
Selecting columns from highlighted regions
very slow for alignments with large numbers of sequences
- Copy Consensus fails for group consensus with 'StringIndexOutOfBounds'
- New Defects
-
- -
- 'SIFTS Mapping Error' when viewing
- structures for protein subsequence (if 'Trim Retrieved
- Sequences' enabled) or Ensembl isoforms (Workaround in
- 2.10.4 is to fail back to N&W mapping)
-
-
+
+ Copy Consensus fails for group consensus
+ with 'StringIndexOutOfBounds'
+
+
+ VAqua(4) provided as fallback Look and Feel for OSX
+ platforms running Java 10
+
+
+ Adding a structure to existing structure
+ view appears to do nothing because the view is hidden behind the alignment view
+
Applet
@@ -166,7 +265,12 @@ li:before {
Copy consensus sequence option in applet
should copy the group consensus when popup is opened on it
-
+
+ Batch Mode
+
+ -
+ Fixed ID width preference is not respected
+
New Known Defects
@@ -179,6 +283,12 @@ li:before {
repeatedly after a series of edits even when the overview
is no longer reflecting updates
+ -
+ 'SIFTS Mapping Error' when viewing
+ structures for protein subsequence (if 'Trim Retrieved
+ Sequences' enabled) or Ensembl isoforms (Workaround in
+ 2.10.4 is to fail back to N&W mapping)
+
|