X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Freleases.html;h=f1f7c0af4d76f90572e23ecccd65e6a7f1e101fc;hb=e614ad6637fcc0652b33d8ed157632eb463221df;hp=9870dc610f5ee059b853dbf142445e3c1a71494e;hpb=1f9c7075b155b6452dab926dc6a05cb65890a26d;p=jalview.git
diff --git a/help/html/releases.html b/help/html/releases.html
index 9870dc6..f1f7c0a 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -71,7 +71,7 @@ li:before {
2.10.3
- 10/10/2017
+ 17/11/2017
|
@@ -93,18 +93,31 @@ li:before {
'Cancel' button in progress bar for JABAWS AACon, RNAAliFold and Disorder prediction jobs
+ Stop codons are excluded in CDS/Protein view from Ensembl locus cross-references
+ Start/End limits are shown in Pairwise Alignment report
+ Sequence fetcher's Free text 'autosearch' feature can be disabled
+ Retrieve IDs tab added for UniProt and PDB easier retrieval of sequences for lists of IDs
+ Short names for sequences retrieved from Uniprot
+
+ Scripting
+
+ - Groovy interpreter updated to 2.4.12
+ - Example groovy script for generating a matrix of percent identity scores for current alignment.
- - Example groovy script for generating a matrix of percent identity scores for current alignment.
Testing and Deployment
- - Test to catch memory leaks in Jalview UI
-
+ - Test to catch memory leaks in Jalview UI
+
+
|
General
- Pressing tab after updating the colour threshold text field doesn't trigger an update to the alignment view
- Race condition when parsing sequence ID strings in parallel
- - Overview windows are also closed when alignment window is closed
+ - Overview windows are also closed when alignment window is closed
+ - Export of features doesn't always respect group visibility
+ - Jumping from column 1 to column 100,000 takes a long time in Cursor mode
Desktop
@@ -114,6 +127,7 @@ li:before {
- Can't edit the query after the server error warning icon is shown in Uniprot and PDB Free Text Search Dialogs
- Slow EnsemblGenome ID lookup
+ - Revised Ensembl REST API CDNA query
- Hidden column marker in last column not rendered when switching back from Wrapped to normal view
- Annotation display corrupted when scrolling right in unwapped alignment view
- Existing features on subsequence incorrectly relocated when full sequence retrieved from database
@@ -124,11 +138,39 @@ li:before {
- Black outlines left after resizing or moving a window
- Unable to minimise windows within the Jalview desktop on OSX
- Mouse wheel doesn't scroll vertically when in wrapped alignment mode
+ - Scale mark not shown when close to right hand end of alignment
+ - Pairwise alignment of selected regions of each selected sequence do not have correct start/end positions
+ - Alignment ruler height set incorrectly after canceling the Alignment Window's Font dialog
+ - Show cross-references not enabled after restoring project until a new view is created
+ - Warning popup about use of SEQUENCE_ID in URL links appears when only default EMBL-EBI link is configured (since 2.10.2b2)
+ - Overview redraws whole window when box position is adjusted
+ - Structure viewer doesn't map all chains in a multi-chain structure when viewing alignment involving more than one chain (since 2.10)
+ - Double residue highlights in cursor mode if new selection moves alignment window
+ - Alignment vanishes when using arrow key in cursor mode to pass hidden column marker
Applet
- Concurrent modification exception when closing alignment panel
+ BioJSON
+
+ -
+ BioJSON export does not preserve non-positional features
+
+
+ Known Java 9 Issues
+
+ - Groovy Console very slow to open and is
+ not responsive when entering characters (Webstart, Java 9.01,
+ OSX 10.10)
+
+
+ New Known Issues
+
+ - Delete/Cut selection doesn't relocate sequence features correctly (for many previous versions of Jalview)
+ - Cursor mode unexpectedly scrolls when using cursor in wrapped panel other than top
+ - Select columns containing feature ignores graduated colour threshold
+
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