X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwebServices%2FJABAWS.html;h=84b2b860799afc4d6de4b846e91ff7f9f922f949;hb=0c4b75bb2b3973218c9aa86f9bec19cd3dc5dcd5;hp=6750b55a69cb3827da8204c64c4a236819b02456;hpb=c17661b22323a66090ea91e04751aa17461b17c5;p=jalview.git diff --git a/help/html/webServices/JABAWS.html b/help/html/webServices/JABAWS.html index 6750b55..84b2b86 100644 --- a/help/html/webServices/JABAWS.html +++ b/help/html/webServices/JABAWS.html @@ -28,10 +28,10 @@ Analysis Web Services system (JABAWS)
Jalview includes a client for interacting with programmatic (SOAP) web - services for the JABAWS - service model, developed at the University of Dundee by Peter - Troshin and Geoff Barton. This is an open source system that - provides a framework for wrapping command line bioinformatics + services provided by the JABAWS + system, developed at the University of Dundee by Peter + Troshin, Sasha Sherstnev, Dan Barton, Fabio Madeira-Marquez, Jim Procter and Geoff Barton. + This is an open source system that provides a framework for wrapping command line bioinformatics analysis programs that enables them to be executed locally or on a cluster using data and analysis parameters provided by a program linked with the JABA engine directly or accessing it remotely via @@ -42,8 +42,7 @@ the Web Services Preferences Panel, and detailed information about a particular service is available from the help text and web pages accessible from its job parameters dialog box. + href="webServicesParams.html">job parameters dialog box.

Obtaining JABAWS
One of the aims of JABAWS @@ -53,29 +52,32 @@ stand-alone execution of analysis programs, or as a job submission engine - enabling larger numbers of jobs to be handled. If you would like to download and install JABAWS for your own use, please go to http://www.compbio.dundee.ac.uk/jabaws for more information. + href="http://www.compbio.dundee.ac.uk/jabaws">http://www.compbio.dundee.ac.uk/jabaws + for more information.

Configuring your own JABAWS services for use by Jalview
Once you have downloaded and installed JABAWS, and verified it is working, all that is needed is to add the URL for your JABAWS server(s) to the list in the Web Services Preferences Panel. After adding your service and - saving your preferences or hitting the 'refresh web services' - button, you should be able to submit jobs to the server via the - alignment window's web services menu. Your JABAWS servers list is - stored in your Jalview preferences, so you will only have to - configure Jalview once for each new server. + href="webServicesPrefs.html">Web Services Preferences + Panel. After adding your service and saving your preferences or + hitting the 'refresh web services' button, you should be able to + submit jobs to the server via the alignment window's web services + menu. Your JABAWS servers list is stored in your Jalview + preferences, so you will only have to configure Jalview once for + each new server.

- Support for accessing JABAWS servers was introduced in - Jalview 2.6. + JABAWS Client updated to version 2.2 in Jalview 2.10.2

Option for adding JABAWS servers which fails validation was introduced from version 2.8.2

+

+ Support for accessing JABAWS servers was introduced in + Jalview 2.6. +