The JAva Bioinformatics
-Analysis Web Services
-system (JABAWS)
-Jalview includes a client for interacting with programmatic (SOAP) web
-services for the JABAWS
-service model, developed at the University of Dundee by Peter Troshin
-and Geoff Barton. This is an open source system that provides a
-framework for wrapping command line bioinformatics analysis programs
-that enables them to be executed locally or on a cluster using data and
-analysis parameters provided by a program linked with the JABA engine directly or
-accessing it remotely via its web services interface.
The list of JABAWS servers known to the Jalview desktop is shown -in the Web Services Preferences -Panel, and detailed information about a particular service is available -from the help text and web pages accessible from its job parameters dialog box.
-Obtaining JABAWS
-One of the aims of JABAWS is to enable you to easily perform
-computationally intensive bioinformatics analysis tasks using your own
-computational facilities. It can be installed on a workstation to
-provide stand-alone execution of analysis programs, or as a job
-submission engine - enabling larger numbers of jobs to be handled. If
-you would like to download and install JABAWS for your own use, please
-go to http://www.compbio.dundee.ac.uk/jabaws
-for more information.
Configuring your own JABAWS services for use by
-Jalview
-Once you have downloaded and installed JABAWS, and verified it is
-working, all that is needed is to add the URL for your JABAWS server(s) to
-the list in the Web Services
-Preferences Panel. After adding your service and saving your preferences
-or hitting the 'refresh web services' button, you should be able to
-submit jobs to the server via the alignment window's web services menu.
-Your JABAWS servers list is stored in your Jalview preferences, so you
-will only have to configure Jalview once for each new server.
Support for accessing JABAWS servers was introduced in -Jalview 2.6.
+
+ The JAva Bioinformatics
+ Analysis Web Services
+ system (JABAWS)
Jalview
+ includes a client for interacting with programmatic (SOAP) web
+ services for the JABAWS
+ service model, developed at the University of Dundee by Peter
+ Troshin and Geoff Barton. This is an open source system that
+ provides a framework for wrapping command line bioinformatics
+ analysis programs that enables them to be executed locally or on a
+ cluster using data and analysis parameters provided by a program
+ linked with the JABA engine directly or accessing it remotely via
+ its web services interface.
+
+ The list of JABAWS servers known to the Jalview desktop is shown in + the Web Services Preferences + Panel, and detailed information about a particular service is + available from the help text and web pages accessible from its job parameters dialog box. +
+
+ Obtaining JABAWS
One of the aims of JABAWS
+ is to enable you to easily perform computationally intensive
+ bioinformatics analysis tasks using your own computational
+ facilities. It can be installed on a workstation to provide
+ stand-alone execution of analysis programs, or as a job submission
+ engine - enabling larger numbers of jobs to be handled. If you would
+ like to download and install JABAWS for your own use, please go to http://www.compbio.dundee.ac.uk/jabaws for more information.
+
+ Configuring your own JABAWS services for use by
+ Jalview
Once you have downloaded and installed JABAWS,
+ and verified it is working, all that is needed is to add the URL for
+ your JABAWS server(s) to the list in the Web Services Preferences Panel. After adding your service and
+ saving your preferences or hitting the 'refresh web services'
+ button, you should be able to submit jobs to the server via the
+ alignment window's web services menu. Your JABAWS servers list is
+ stored in your Jalview preferences, so you will only have to
+ configure Jalview once for each new server.
+
+ Support for accessing JABAWS servers was introduced in + Jalview 2.6. +
++ Option for adding JABAWS servers which fails validation was + introduced from version 2.8.2 +