X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwebServices%2FRNAalifold.html;h=b0612d52ace55573c17192fc5346120e9789904b;hb=db93a1adcbe0a4eaaf06e0a70ade0d6c5c1961c3;hp=99d59e6f7d891050ba5f9510e43952b7870abe0e;hpb=a90e2fe3cc3b779521a81cf8de410936f3a777c1;p=jalview.git diff --git a/help/html/webServices/RNAalifold.html b/help/html/webServices/RNAalifold.html index 99d59e6..b0612d5 100644 --- a/help/html/webServices/RNAalifold.html +++ b/help/html/webServices/RNAalifold.html @@ -36,8 +36,7 @@ Gruber, and Peter F. Stadler, RNAalifold: Improved consensus structure prediction for RNA alignments (BMC Bioinformatics, 9:474, 2008). Download the paper at http://www.biomedcentral.com/1471-2105/9/474. + href="http://www.biomedcentral.com/1471-2105/9/474">http://www.biomedcentral.com/1471-2105/9/474.

Running RNAalifold from Jalview
@@ -54,8 +53,7 @@ RNAalifold prediction parameters
JABAWS and Jalview only provide access to a selection of the RNAalifold arguments. For a full description, see the documentation at http://www.tbi.univie.ac.at/RNA/RNAalifold.html. + href="http://www.tbi.univie.ac.at/RNA/RNAalifold.html">http://www.tbi.univie.ac.at/RNA/RNAalifold.html.

Supported Arguments which give alternate structures @@ -75,8 +73,7 @@ Calculate an MEA structure where the expected Accuracy is computed from the base pair probabilities. A more detailed description can be found in the RNAfold program documentation at http://www.tbi.univie.ac.at/RNA/RNAfold.html. + href="http://www.tbi.univie.ac.at/RNA/RNAfold.html">http://www.tbi.univie.ac.at/RNA/RNAfold.html.

Example RNAalifold Structure Annotation rows