X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwebServices%2Fdbreffetcher.html;h=1f61deab34bc3a577418be62afca9c0ddd0d3055;hb=2b8c0785318a3528e1876e8e2dd48b7d831eae69;hp=4e0f1ba883c8194dae8c28c7c0c29b6a87f715f3;hpb=db93a1adcbe0a4eaaf06e0a70ade0d6c5c1961c3;p=jalview.git

diff --git a/help/html/webServices/dbreffetcher.html b/help/html/webServices/dbreffetcher.html
index 4e0f1ba..1f61dea 100644
--- a/help/html/webServices/dbreffetcher.html
+++ b/help/html/webServices/dbreffetcher.html
@@ -1,6 +1,6 @@
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -25,11 +25,12 @@
 <p>
 <p>
   <strong>Discovering Database References for Sequences</strong><br>
-  Database references are associated with a sequence are displayed as a
-  list in the tooltip shown when mousing over its sequence ID. Jalview
-  uses references for the retrieval of <a
-    href="../features/viewingpdbs.html">PDB structures</a> and <a
-    href="../features/dasfeatures.html">DAS features</a>, and for
+  Database references associated with a sequence are displayed as an
+  abbreviated list in the tooltip shown when mousing over its sequence
+  ID, and can be viewed in full via the
+  <a href="../io/exportseqreport.html">Sequence Details</a> window. .
+  Jalview also uses references for the retrieval of
+  <a href="../features/viewingpdbs.html">PDB structures</a>, and for
   retrieving sequence cross-references such as the protein products of a
   DNA sequence.
 </p>
@@ -38,21 +39,18 @@
   application provides three ways to access the retrieval function.
   Either:
 <ul>
-  <li>select the <strong>Discover PDB IDs</strong> option from the
-    structure submenu of the sequence's popup menu
-  </li>
-  <li>Choose one of the options from the 'Fetch DB Refs' submenu in
+	<li>select the <strong>Structure Chooser...</strong> option from
+		the Sequence ID popup menu.
+	</li>
+	<li>Choose one of the options from the 'Fetch DB Refs' submenu in
     the alignment window's <strong>Web Services</strong> menu:
     <ul>
-      <li><em>Standard Databases</em> will fetch references from
-        the EBI databases plus currently selected DAS sources</li>
-      <li>The other entries submenus leading to lists of individual
+			<li><em>Standard Databases</em> will fetch references from EBI
+				databases appropriate for the sequence type (Nucleotide or Protein)</li>
+			<li>The other entries submenus leading to lists of individual
         database sources that Jalview can access.</li>
     </ul>
   </li>
-  <li>Answer 'Yes' when asked if you wish to retrieve database
-    references for your sequences after initiating a DAS Sequence
-    Feature fetch.</li>
 </ul>
 <p>Jalview discovers references for a sequence by generating a set
   of ID queries from the ID string of each sequence in the alignment. It