X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwebServices%2Fdbreffetcher.html;h=b02f940ef6f81a134fb308ef64f3a3a67b6c41d5;hb=cb56d532a3b7cc50d724b0761cc7c49ed2d081cd;hp=e06300894236fa285ebf851d64a9219e90bf82d7;hpb=a8f483d04205bb8273ee311c12968b7e86d205fa;p=jalview.git diff --git a/help/html/webServices/dbreffetcher.html b/help/html/webServices/dbreffetcher.html index e063008..b02f940 100644 --- a/help/html/webServices/dbreffetcher.html +++ b/help/html/webServices/dbreffetcher.html @@ -6,16 +6,18 @@ * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * - * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . * The Jalview Authors are detailed in the 'AUTHORS' file. ---> + --> @@ -43,11 +45,11 @@ of ID queries from the ID string of each sequence in the alignment. It then tries to query a subset of all the databases it can access in order to match the alignment sequence to any records retrieved from the database. If a match is found, then the sequence is annotated with that database's -reference, and any cross-references that it's records contain.

+reference, and any cross-references that its records contain.

The Sequence Identification Process
The method of accession id discovery is derived from the method which earlier Jalview versions used for Uniprot sequence feature retrieval, -and was originally restricted to the identifaction of valid Uniprot +and was originally restricted to the identification of valid Uniprot accessions.
Essentially, Jalview will try to retrieve records from a subset of the databases accessible by the sequence