Web services
-Originally Jalview used SRS server to retrieve sequence features for a given - alignment. In addition certain remote alignment programs could be called from - the Jalview interface and the results displayed in a new alignment panel.
-Jalview's web based computations are now being developed further, - using SOAP based services to expose protein sequence alignment and - secondary structure prediction programs. These services actually run - on the cluster based in Dundee, and maintained by the Barton group. -
In the future, Jalview will be able to discover services - dynamically, and the repertoire will include methods for repeat - analysis, sequence identification and remote homology - detection. The web service methodology will also allow potentially - expensive Jalview analysis functions like PCA to be distributed, if - necessary, when the user is dealing with very large numbers of sequences.
- - + + + + +Web services
+ +Jalview includes clients for a variety of web services for both +bioinformatic data retrieval and analysis. +
Jalview's distributed computations are SOAP based services +exposing protein sequence alignment and secondary structure prediction +programs. These services actually run on the cluster based in the School +of Life Sciences, University of Dundee, and are maintained by the Barton +group.
+ +Jalview 2.5 includes a client to enable the user to submit one or +more sequences or sequence IDs to analysis workflows provided by the EnVision2 web +application. This allows Jalview users to easily access the EnCore +network of databases and analysis services developed by members of ENFIN.
+Web Service Dialog Box
+
+This dialog box is displayed when a web service job is submitted. +It gives the name of the service and any method citation information, +and monitors the progress of the calculation. The cancel button will +permanently cancel the job, but this is only possible for some services. +
+Current services: +