X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwebServices%2Fjnet.html;h=29918d63634ed7e6bdc31da9f741b20c9dd4aed9;hb=17d3ea2201aefcedab0ed6513cbd420f87f8b999;hp=114fc331b652db293c4c66cc9bd2056b7dbac76c;hpb=c554d41a4effc6719895bda6b3abc04c032715a8;p=jalview.git

diff --git a/help/html/webServices/jnet.html b/help/html/webServices/jnet.html
index 114fc33..29918d6 100755
--- a/help/html/webServices/jnet.html
+++ b/help/html/webServices/jnet.html
@@ -1,4 +1,21 @@
 <html>
+<!--
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+-->
 <head>
 <title>JNet Secondary Structure Prediction</title>
 </head>
@@ -10,11 +27,10 @@ composition and similarity to sequences with known secondary structure.
 The JNet method uses several different neural networks and decides on
 the most likely prediction via a jury network. <br>
 <ul>
-	<li>
-	Cole C., Barber J.D. and Barton G.J. (2008) The Jpred 3 secondary structure prediction server
-	<em>Nucleic Acids Research</em> <strong>36</strong> W197-W201</li>
-	<li>
-	Cuff J. A and Barton G.J (1999) Application of enhanced
+	<li>Cole C., Barber J.D. and Barton G.J. (2008) The Jpred 3
+	secondary structure prediction server <em>Nucleic Acids Research</em> <strong>36</strong>
+	W197-W201</li>
+	<li>Cuff J. A and Barton G.J (1999) Application of enhanced
 	multiple sequence alignment profiles to improve protein secondary
 	structure prediction <em>Proteins</em> <strong>40</strong> 502-511</li>
 </ul>
@@ -91,5 +107,10 @@ The annotation bars below the alignment are as follows:
 	invoked to rationalise significantly different primary predictions.</em></li>
 </ul>
 </p>
+<em>As of Jalview 2.6, the Jnet service accessed accessed via the
+'Secondary structure prediction' submenu should be considered a legacy
+Jalview SOAP service, and will be replaced in the near future by a
+JABAWS Jnet service.</em>
+
 </body>
 </html>
